Table 2 Verification of in silico results for 28 DcSto insertion sites in the carrot genome by DcS-ILP
Comparison of in silico / DcS-ILP results | Accession / insertion site combinations | |
|---|---|---|
number | % | |
empty / homozygous empty | 541 | 64.4% |
occupied / homozygous occupied | 128 | 15.2% |
occupied / heterozygous (empty + occupied) | 94 | 11.2% |
empty / homozygous variant of different size (‘empty’ for DcSto) | 30 | 3.6% |
empty / heterozygous (empty + variant of different size) | 13 | 1.6% |
occupied / heterozygous (occupied + variant of different size) | 1 | 0.1% |
Total correct calls | 807 | 96.1% |
 empty / heterozygous (empty + occupied) | 11 | 1.3% |
 empty / homozygous occupied | 8 | 1.0% |
 occupied / homozygous empty | 1 | 0.1% |
Total incorrect calls | 20 | 2.4% |
No amplification | 13 | 1.5% |
Total | 840 | 100% |