Fig. 6

co-expression modules with immune genes are negatively correlated with TE modules. a enriched annotations for genes belonging to module M33 identified in the Reactome database. b enriched annotations for genes belonging to module M35 identified in the Reactome database. c top 30 genes with highest module membership (high correlation with representative profile of the module) for each module. d–e correlation plot showing high within group correlation and negative between group correlation between the TEs in the TE modules and the immune genes in modules M33 and M35. d data from breast, and e data from esophagus. Color label on top of the correlation plot show different classes of TEs, and genes that are annotated with the GO term “immune system process”