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Fig. 2 | Mobile DNA

Fig. 2

From: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements

Fig. 2

Relationship between read counts for each L1HS locus, and the mappability of the locus. Log2 transformed total read counts mapped to each L1HS locus in the hg19 genome, summed across all samples in our dataset are plotted against the total uniquely mappable positions (number of positions with mappability score = 1 based on 48 bp mappability calculated with GEM) for each locus. L1HS loci with zero read counts are marked at − 1 instead of –infinity. a read counts from Bowtie1 alignment with uniquely mapped reads only (b) read counts from STAR alignment allowing multi-mapped reads up to 200. c comparison of read counts for each L1HS locus between the uniquely mapped reads and multi-mapped reads

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