Table 2 Summary of TATE copy analyzes from the distinct genomes presenting at least one potentially encoding copy
From: Study of VIPER and TATE in kinetoplastids and the evolution of tyrosine recombinase retrotransposons
Species | No of analyzed copies | No of copies with at least one potentially encoding ORF | No of copies with the three potentially encoding ORFs | No of potential encoding copies with YR and RT/RT related domains | No of copies with SDRs | Structure of SDRs size in base pairs, percentage of identity | No of putative autonomous copies* | Mean identity among copies in nu (total) and aa levels (for each ORF)** |
|---|---|---|---|---|---|---|---|---|
B. saltans | 5 | 2 | 2 *one ORF with the three genes | 0 | 1 | 5′ → A1, A2 3′ → B1 → B2 A: 73 bp, 99%; B: 161 bp, 81% | 0 | nu: na Gag-like, YR, RT/RH (2, 1464 aa): 49% |
T. theileri | 15 | 7 | 4 | 0 | 1 (incomplete/missing data) | 5′ → A1 3′ → A2 A: 91 bp, 100%;; B: missing data | 0 | nu: na Gag-like: na YR (3, 584 aa): 45.3% RT/RH (4, 698 aa): 86.9% |
C. fasciculata | 15 | 7 | 4 | 0 | 0 | na | 0 | nu: na Gag -like (3, 240 aa): 31.1% YR (7, 727 aa): 44.8% RT/RH (3, 473 aa): 53.6% |
C. mellificae | 11 | 3 | 1 | 1 | 1 (incomplete/missing data) | 5′ → A1 3′ → A2 A: 357 bp, 100%; B: missing data | 0 | nu: na Gag-like (2, 240 aa): 25.6% YR (3, 434 aa): 36.3% RT/RH: 1 sequence |
S. culicis | 15 | 1 | 1 | 0 | 0 | na | 0 | 1 sequence |
Lep. pyrrhocoris | 15 | 11 | 4 | 0 | 0 | na | 0 | nu: na Gag-like (5, 194 aa): 29.7% YR (10, 468 aa): 48.9% RT/RH (8, 882 aa): 55.6% |
L. braziliensis | 15 | 15 | 7 | 6 | 1 | 5′ → A1 3′ → B1 → A2 → B2 A: 381 bp, 96%; B: 294 bp, 99% | ? | nu: 90% Gag-like (8, 450 aa): 73.3% YR (15, 982 aa): 95.6% RT/RH (14, 954 aa): 96% |