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Table 1 Summary metrics of the four assemblies showing the relative levels of completeness and fragmentation

From: Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes

  A. halleri halleri A. halleri gemmifera A.lyrata A. thaliana
Nb scaffolds 3152 2239 695 7
Total length 174 Mb 196 Mb 207 Mb 120 Mb
Genome cov. 68.3% 76.9% 89.9% 88.9%
Longest scaff. 1.5 Mb 4.3 Mb 33.1 Mb 30.4 Mb
N50 279,389 712,249 24,464,547 23,459,830
L50 177 71 4 3
CDS content 18.7% 19.5% 16.3% 35.4%
non-CDS gene content 19.3% 19.6% 15.9% 14.9%
Number of TEs 68,583 85,835 87,477 39,210
TE content (TE content estimation) 15.2% (32.7%) 20.8% (30.2%) 27.8% (24.5%) 17.4% (19.1%)
Other repeats content 4.5% 5.4% 5.8% 4.3%
Unannotated bases 42.2% 34.8% 34.7% 28.1%
Complete universal single-copy orthologs 95.3% 97.6% 98.5% 98.2%
Fragmented universal single-copy orthologs 1.5% 0.3% 0.3% 0.5%
Missing universal single-copy orthologs 3.2% 2.1% 1.2% 1.3%