Table 3 Common and differential m4C and m6A methylation sites in CDS between C6706 and CV2
From: A mobile restriction modification system consisting of methylases on the IncA/C plasmid
Chromosome | Gene code | Gene number | Common methylation sites | Differential methylation sites | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
m4C | m6A | Total number (involved genes) | m4C | m6A | Total number (involved genes) | ||||||
C6706 | CV2 | C6706 | CV2 | C6706 | CV2 | ||||||
I | VC | 2775 | 80,978 | 36,609 | 117,587 (2744) | 61,330 | 56,919 | 2203 | 1882 | 63,533 (2715) | 58,801 (2700) |
VC_r | 25 | 1697 | 419 | 2116 (25) | 1093 | 1082 | 56 | 94 | 1149 [23] | 1176 (24) | |
VC_t | 94 | 314 | 70 | 384 (85) | 236 | 231 | 12 | 6 | 248 (79) | 237 (82) | |
II | VC_A | 1115 | 2980 | 1501 | 4481 (486) | 2476 | 2335 | 137 | 105 | 2613 (464) | 2440 (447) |
VC_At | 4 | 3 | 0 | 3 (1) | 2 | 3 | 0 | 0 | 2 (1) | 3 (1) | |
Total | 4013 | 85,972 | 38,599 | 124,571 (3341) | 65,137 | 60,570 | 2408 | 2087 | 67,545 (3282) | 62,657 (3254) | |