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Fig. 1 | Mobile DNA

Fig. 1

From: MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies

Fig. 1

MGERT workflow chart. The genome assembly used as input for RepeatModeler for de novo search and classification of MGEs; their families that have been chosen by a user are pipelined to RepeatMasker for similarity search; these regions of similarity then being excised by BEDTools; conserved domain homology search by RPS-Blast followed by ORF extraction by ORFinder; adding flanking regions of specified length. Black outline of the input squares designates mandatory files; a black outline of output squares designates the output is used in the following step of the pipeline

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Mobile DNA

ISSN: 1759-8753