Table 3 The number of lncRNA genes and protein coding genes contain the insertions from youngest retrotransposons
From: Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs
Young RTn | protein coding gene | lncRNA gene |
|---|---|---|
L1D1 | 120 | 49 |
L1D2 | 129 | 60 |
L1D3 | 47 | 25 |
L1D4 | 61 | 29 |
L1D5 | 149 | 59 |
L1D6 | 108 | 28 |
L1D7 | 204 | 96 |
Total youngest L1 s | 660 (3.13%) | 286 (1.98%) |
ERV6A | 30 | 13 |
ERV6B | 24 | 17 |
Total youngest ERVs | 42 (0.20%) | 21 (0.15%) |
SINEA1 | 3464 | 1038 |
SINEA2 | 7696 | 2612 |
SINEA3 | 3786 | 1134 |
Total youngest SINEs | 9230 (43.77%) | 3402 (23.50%) |
Total | 9341(44.30%) | 3494 (24.13%) |