Table 1 Classification of L1 families in the pig Genome
From: Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs
L1 family | Subfamily Number | Length (bp) | Active L1 Number | |||||
|---|---|---|---|---|---|---|---|---|
Consensus | 5’UTR | ORF1 | IGR | ORF2 | 3’UTR (No PolyA) | |||
L1A | 7 | 5837–7404 | 931–1959 | 897–906 | 67–396 | 3655–3828 | 180–305 | |
L1B | 12 | 5975–7740 | 551–2335 | 878–910 | 390–447 | 3766–3813 | 217–305 | |
L1C | 13 | 6462–7532 | 1037–2024 | 879–891 | 385–529 | 3766–3814 | 247–268 | |
L1D | 21 | 7072–8822 | 1562–3254 | 887–891 | 501–521 | 3807–3819 | 270–277 | 98 |