Table 1 Transposable element annotation metrics
From: RepetDB: a unified resource for transposable element references
Species | Genome assembly annotated (without gap) | Cumulative coverage | Genome coverage | No. of consensus sequences | No. of genome copies | No. of full-length genome copies |
|---|---|---|---|---|---|---|
Brassicaceae | ||||||
Arabidopsis lyrata | 206667935 | 76899516 | 37.21 | 2408 | 112563 | 9527 |
Arabidopsis thaliana | 119146348 | 22954742 | 19.27 | 641 | 37129 | 2513 |
Arabis alpina | 309171870 | 152175264 | 49.22 | 3204 | 268936 | 11729 |
Brassica rapa | 283841084 | 101457103 | 35.74 | 2660 | 239373 | 10881 |
Capsella rubella | 134834574 | 27975436 | 20.75 | 873 | 54560 | 3326 |
Schrenkiella parvula | 123600562 | 19838473 | 16.05 | 455 | 37597 | 1356 |
Rosaceae | ||||||
Fragaria vesca | 211673467 | 58062323 | 27.43 | 1543 | 112822 | 8576 |
Malus domestica | 624851326 | 365363669 | 58.47 | 2456 | 564270 | 25280 |
Prunus persica | 227411381 | 99590159 | 43.79 | 1738 | 170681 | 9056 |
Pyrus communis | 577335413 | 194166715 | 33.63 | 975 | 482345 | 11435 |
Vitaceae | ||||||
Vitis vinifera | 486205130 | 290981308 | 59.85 | 2473 | 475119 | 10551 |
Monocots | ||||||
Triticum aestivum | 986092508 | 894245831 | 90.69 | 6671 | 785986 | 15905 |
Zea mays | 2059701728 | 1768705851 | 85.87 | 7319 | 1381303 | 41666 |
Fungi | ||||||
Blumeria graminis hordei | 87976437 | 59069666 | 67.14 | 733 | 122756 | 8909 |
Botrytis cinerea B0510 | 42630066 | 1583714 | 3.72 | 15 | 1927 | 263 |
Botrytis cinerea T4 | 37887365 | 254124 | 0.67 | 24 | 611 | 62 |
Colletotrichum higginsianum | 50819261 | 3505545 | 6.90 | 41 | 1482 | 440 |
Magnaporthe oryzae | 40949321 | 4549294 | 11.11 | 37 | 4358 | 463 |
Melampsora larici populina | 97682699 | 49975736 | 51.16 | 1779 | 88708 | 6942 |
Microtryum violaceum | 25201507 | 4423374 | 17.55 | 286 | 9620 | 640 |
Puccinia graminis | 81521292 | 37620112 | 46.15 | 1625 | 69167 | 6648 |
Sclerotinia sclerotiorum | 38001451 | 3459261 | 9.10 | 178 | 13868 | 622 |
Tuber melanosporum | 123533734 | 73821108 | 59.76 | 905 | 72212 | 3845 |
Total | 39039 | 5107393 | 190635 | |||