Skip to main content

Advertisement

Table 1 Transposable element annotation metrics

From: RepetDB: a unified resource for transposable element references

Species Genome assembly annotated (without gap) Cumulative coverage Genome coverage No. of consensus sequences No. of genome copies No. of full-length genome copies
Brassicaceae
Arabidopsis lyrata 206667935 76899516 37.21 2408 112563 9527
Arabidopsis thaliana 119146348 22954742 19.27 641 37129 2513
Arabis alpina 309171870 152175264 49.22 3204 268936 11729
Brassica rapa 283841084 101457103 35.74 2660 239373 10881
Capsella rubella 134834574 27975436 20.75 873 54560 3326
Schrenkiella parvula 123600562 19838473 16.05 455 37597 1356
Rosaceae
Fragaria vesca 211673467 58062323 27.43 1543 112822 8576
Malus domestica 624851326 365363669 58.47 2456 564270 25280
Prunus persica 227411381 99590159 43.79 1738 170681 9056
Pyrus communis 577335413 194166715 33.63 975 482345 11435
Vitaceae
Vitis vinifera 486205130 290981308 59.85 2473 475119 10551
Monocots
Triticum aestivum 986092508 894245831 90.69 6671 785986 15905
Zea mays 2059701728 1768705851 85.87 7319 1381303 41666
Fungi
Blumeria graminis hordei 87976437 59069666 67.14 733 122756 8909
Botrytis cinerea B0510 42630066 1583714 3.72 15 1927 263
Botrytis cinerea T4 37887365 254124 0.67 24 611 62
Colletotrichum higginsianum 50819261 3505545 6.90 41 1482 440
Magnaporthe oryzae 40949321 4549294 11.11 37 4358 463
Melampsora larici populina 97682699 49975736 51.16 1779 88708 6942
Microtryum violaceum 25201507 4423374 17.55 286 9620 640
Puccinia graminis 81521292 37620112 46.15 1625 69167 6648
Sclerotinia sclerotiorum 38001451 3459261 9.10 178 13868 622
Tuber melanosporum 123533734 73821108 59.76 905 72212 3845
Total     39039 5107393 190635