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Table 2 Unification of classification of Ty3/gypsy elements

From: Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

REXdb

GyDB

ICTV

other

chromovirus|CRM

chromoviruses|CRM (Beetle1, CRM)

CRM [27]

chromovirus|Chlamyvir

Chlamyvir [27]

chromovirus|Galadriel

chromoviruses|Galadriel (Galadriel, Monkey, Tntom1)

Galadriel [27]

chromovirus|Tcn1a

only Tf1/Sushi-related clades of chromoviruses in non-Viridiplantae spp.: Maggy (Maggy, Dane-1), marY1 (marY1), Pyret (Pyret, Cgret, Cft-1, Skippy), TF1–2 (TF1), V-clade (Amn-ichi, Amn-ni, Amn-san, Sushi-ichi)

Tcn1 [27, 31]

chromovirus|Reina

chromoviruses|Reina (Reina, Gloin, Gimli, Ifg7)

Reina [27]

chromovirus|Tekay

chromoviruses|Del (Del, Bagy-1, Legolas, Peabody, Retrosat-2)

Metavirus (Del1)

Tekay [27]

non-chromovirus|OTA|Athila

Athila/Tat|Athila (Athila4–1, Diaspora, Bagy-2, Cyclops-2)

Metavirus (Athila)

Athila [32]

non-chromovirus|OTA|Tat|TatI

TatI [34]

non-chromovirus|OTA|Tat|TatII

TatII [34]

non-chromovirus|OTA|Tat|TatIII

TatIII [34]

non-chromovirus|OTA|Tat|Ogre

Athila/Tat|Tat (Ogre)

Ogre [33]; TatIV(Ogre) and TatV [34]

non-chromovirus|OTA|Tat|Retand

Athila/Tat|Tat (Cinful-1, Tat4–1, RIRE2, RetroSor1)

Metavirus (Tat4)

Retand [65]; TatVI [34]

non-chromovirus|Phygy

non-chromovirus|Selgy

  1. aTcn1 clade belongs to Tf1/Sushi group of retrotransposons which occur in fungi and vertebrate species