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Table 1 Unification of classification of Ty1/copia elements

From: Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

REXdb

Wicker and Kellera

GyDBb

ICTVc

Ale

Ale

Sirevirus/Retrofit ((Koala, Melmoth, Retrofit)

pseudovirus (Melmoth, Retrofit, Hopscotch)

Alesia

Ale

–

–

Angela

Angela

–

pseudovirus (BARE-1)

Bianca

Bianca

–

–

Bryco

–

–

–

Lyco

–

–

–

Gymco-I, II, III, IV

–

–

–

Ikeros

Angela

Tork (Sto-4)

pseudovirus (Sto-4)

Ivana

Ivana

Sirevirus/Oryco (Araco, Oryco1–1, Oryco1–2, Poco, Vitico1–1)

–

Osser

–

Osser

hemivirus (Osser)

SIRE

Maximus

Sirevirus/SIRE (Endovir1–1, Opie-2, SIRE1–4, ToRTL1, TSI-9)

Sirevirus (Endovir1–1, SIRE1, ToRTL1, Opie-2)

TAR

TAR

Tork (Fourf)

–

Tork

–

Tork (Batata, RTvr2, Tnt-1, Tork4, Tto1, V12)

pseudovirus (Tnt-1, Tto1)

  1. a[24], b [20, 21], c [75]