| | |
Divergence and age of families based on their 3′ extremity
|
Genomic Copy #
|
Genomic FL Copy #
|
|---|
|
Family Name
|
Length of consensus (bp)
|
Average pairwise divergence
|
Average divergence from consensus (% ± S.E.)
|
Age (Myr)
|
Ec
|
Cs
|
Ec
|
Cs
|
|
L1_Ec1_I
|
6639
|
0.70 ± 0.20
|
0.43 ± 0.38
|
2.7 (1.9–3.5)
|
571
|
–
|
94 (57)
|
–
|
|
L1_Ec1_II
|
6644
|
0.80 ± 0.20
|
0.46 ± 0.11
|
3.1 (2.3–3.8)
|
532
|
–
|
102 (64)
|
–
|
|
L1_Ec1_III
|
6539
|
0.80 ± 0.20
|
0.43 ± 0.09
|
3.1 (2.3–3.8)
|
420
|
–
|
2 (3)
|
–
|
|
L1_Ec1_IV
|
6411
|
1.40 ± 0.20
|
0.69 ± 0.08
|
5.4 (4.6–6.2)
|
1589
|
–
|
147 (77)
|
–
|
|
L1_Ec1_V
|
6664
|
1.80 ± 0.20
|
1.08 ± 0.19
|
6.9 (6.2–7.7)
|
635
|
–
|
117 (73)
|
–
|
|
L1_Ec1_VI
|
6716
|
4.70 ± 0 .40
|
2.64 ± 0.24
|
18.1 (16.5–19.6)
|
630
|
–
|
73 (16)
|
–
|
|
L1_Ec1_VII
|
7914
|
3.30 ± 0.10
|
1.68 ± 0.08
|
12.7 (12.3–13.1)
|
1285
|
–
|
88 (15)
|
–
|
|
L1_Ec1_VIII
|
6701
|
3.60 ± 0.30
|
2.02 ± 0.19
|
13.8 (12.7–15.0)
|
459
|
–
|
37 (17)
|
–
|
|
L1_Ec1_IX
|
6787
|
5.80 ± 0.40
|
3.16 ± 0.22
|
22.3 (20.8–23.8)
|
1931
|
–
|
140 (15)
|
–
|
|
L1_Ec1_X
|
6791
|
11.20 ± 0.50
|
6.10 ± 0.33
|
43.1 (41.2–45.0)
|
3571
|
–
|
251 (53)
|
–
|
|
L1_Ec2_I
|
5924
|
1.00 ± 0.10
|
.051 ± 0.03
|
3.8 (3.5–4.2)
|
2561
|
–
|
403 (31)
|
–
|
|
L1_Ec2_II
|
5918
|
4.40 ± 0.30
|
2.47 ± 0.21
|
16.9 (15.8–18.1)
|
1350
|
–
|
166 (11)
|
–
|
|
L1_Ec2_III
|
5943
|
5.90 ± 0.30
|
3.22 ± 0.24
|
22.7 (21.5–23.8)
|
355
|
–
|
2 (0)
|
–
|
|
L1_Ec2_IV
|
5941
|
5.80 ± 0.30
|
3.12 ± .021
|
22.3 (21.2–23.5)
|
477
|
–
|
58 (5)
|
–
|
|
L1_Ec2_V
|
5950
|
6.00 ± 0 .30
|
3.20 ± 0.20
|
23.1 (21.9–24.2)
|
1423
|
–
|
137 (13)
|
–
|
|
L1_Ec2_VI
|
5963
|
7.70 ± 0 .30
|
4.13 ± 0.23
|
29.6 (28.5–30.8)
|
1839
|
–
|
196 (23)
|
–
|
|
L1_Ec2_VII
|
5986
|
9.60 ± 0.40
|
5.17 ± 0.28
|
36.9 (35.4–38.5)
|
4508
|
–
|
572 (35)
|
–
|
|
L1_Cs2_I
|
6002
|
5.2 ± 0.40
|
2.9 ± 0.25
|
20.0 (18.5–21.5)
|
–
|
6700
|
–
|
512 (6)
|
|
L1_Cs2_II
|
5686
|
8.7 ± 0.40
|
4.8 ± 0.33
|
33.5 (31.9–35.0)
|
–
|
2372
|
–
|
140 (4)
|
|
L1_Cs2_III
|
5518
|
9.5 ± 0.40
|
4.9 ± 0.24
|
36.5 (35.0–38.1)
|
–
|
1716
|
–
|
46 (12)
|
|
L1_Perissodactyla2_I
|
6127
|
13.90 ± 0.40
|
7.27 ± 0.29
|
53.5 (51.9–55.0)
|
9208
|
6572
|
476 (78)
|
312 (6)
|
|
L1_Cs3_I
|
6218
|
5.8 ± 0.30
|
3.0 ± 0.16
|
22.3 (21.2–23.5)
|
–
|
2755
|
–
|
234 (1)
|
|
L1_Ec4_I
|
6997
|
3.60 ± 0.20
|
1.95 ± 0.12
|
13.8 (13.1–14.6)
|
2622
|
–
|
141 (13)
|
–
|
|
L1_Ec4_II
|
6993
|
8.00 ± 0.40
|
4.38 ± 0.24
|
30.8 (29.2–32.3)
|
4150
|
–
|
316 (40)
|
–
|
|
L1_Ec4_III
|
7014
|
9.90 ± 0.40
|
5.34 ± 0.26
|
38.1 (36.5–39.6)
|
6549
|
–
|
251 (21)
|
–
|
|
L1_Perissodactyla4_I
|
7048
|
11.30 ± 0.40
|
5.99 ± 0.27
|
43.5 (41.9–45.0)
|
9944
|
38,189
|
661 (89)
|
1683 (12)
|
|
L1_Perissodactyla4_II
|
5896
|
17.2 ± 0.50
|
8.9 ± 0.27
|
66.2 (64.2–68.1)
|
9002
|
8807
|
94 (18)
|
127 (1)
|
|
L1_Perissodactyla5_I
|
5801
|
11.3 ± 0.40
|
6.4 ± 0.36
|
43.5 (41.9–45.0)
|
17,202
|
15,912
|
277 (33)
|
293 (2)
|
|
L1_Perissodactyla6_I
|
5828
|
16.40 ± 0.50
|
9.0 ± 0.39
|
63.1 (61.2–65.0)
|
13,988
|
13,692
|
274 (12)
|
308 (6)
|
|
L1_Perissodactyla7_I
|
6498
|
18.10 ± 0.60
|
10.7 ± 0.61
|
69.6 (67.3–71.9)
|
17,578
|
16,921
|
323 (11)
|
404 (10)
|
- Ec horse-specific, Cs rhinoceros-specific; perissodacyla = families that are shared between horse and rhinoceros. Family age was estimated using a substitution rate of 0.13%/myr. The number of full-length element was estimated by counting the number of 5’UTR generated by each family and the number estimated by GPS (in parenthesis)
