Table 1 Copy number, length, divergence and age of Perrisodactyla L1 families. The families are organized by promoter types (from 1 to 7)
|  |  | Divergence and age of families based on their 3′ extremity | Genomic Copy # | Genomic FL Copy # | ||||
|---|---|---|---|---|---|---|---|---|
Family Name | Length of consensus (bp) | Average pairwise divergence | Average divergence from consensus (% ± S.E.) | Age (Myr) | Ec | Cs | Ec | Cs |
L1_Ec1_I | 6639 | 0.70 ± 0.20 | 0.43 ± 0.38 | 2.7 (1.9–3.5) | 571 | – | 94 (57) | – |
L1_Ec1_II | 6644 | 0.80 ± 0.20 | 0.46 ± 0.11 | 3.1 (2.3–3.8) | 532 | – | 102 (64) | – |
L1_Ec1_III | 6539 | 0.80 ± 0.20 | 0.43 ± 0.09 | 3.1 (2.3–3.8) | 420 | – | 2 (3) | – |
L1_Ec1_IV | 6411 | 1.40 ± 0.20 | 0.69 ± 0.08 | 5.4 (4.6–6.2) | 1589 | – | 147 (77) | – |
L1_Ec1_V | 6664 | 1.80 ± 0.20 | 1.08 ± 0.19 | 6.9 (6.2–7.7) | 635 | – | 117 (73) | – |
L1_Ec1_VI | 6716 | 4.70 ± 0 .40 | 2.64 ± 0.24 | 18.1 (16.5–19.6) | 630 | – | 73 (16) | – |
L1_Ec1_VII | 7914 | 3.30 ± 0.10 | 1.68 ± 0.08 | 12.7 (12.3–13.1) | 1285 | – | 88 (15) | – |
L1_Ec1_VIII | 6701 | 3.60 ± 0.30 | 2.02 ± 0.19 | 13.8 (12.7–15.0) | 459 | – | 37 (17) | – |
L1_Ec1_IX | 6787 | 5.80 ± 0.40 | 3.16 ± 0.22 | 22.3 (20.8–23.8) | 1931 | – | 140 (15) | – |
L1_Ec1_X | 6791 | 11.20 ± 0.50 | 6.10 ± 0.33 | 43.1 (41.2–45.0) | 3571 | – | 251 (53) | – |
L1_Ec2_I | 5924 | 1.00 ± 0.10 | .051 ± 0.03 | 3.8 (3.5–4.2) | 2561 | – | 403 (31) | – |
L1_Ec2_II | 5918 | 4.40 ± 0.30 | 2.47 ± 0.21 | 16.9 (15.8–18.1) | 1350 | – | 166 (11) | – |
L1_Ec2_III | 5943 | 5.90 ± 0.30 | 3.22 ± 0.24 | 22.7 (21.5–23.8) | 355 | – | 2 (0) | – |
L1_Ec2_IV | 5941 | 5.80 ± 0.30 | 3.12 ± .021 | 22.3 (21.2–23.5) | 477 | – | 58 (5) | – |
L1_Ec2_V | 5950 | 6.00 ± 0 .30 | 3.20 ± 0.20 | 23.1 (21.9–24.2) | 1423 | – | 137 (13) | – |
L1_Ec2_VI | 5963 | 7.70 ± 0 .30 | 4.13 ± 0.23 | 29.6 (28.5–30.8) | 1839 | – | 196 (23) | – |
L1_Ec2_VII | 5986 | 9.60 ± 0.40 | 5.17 ± 0.28 | 36.9 (35.4–38.5) | 4508 | – | 572 (35) | – |
L1_Cs2_I | 6002 | 5.2 ± 0.40 | 2.9 ± 0.25 | 20.0 (18.5–21.5) | – | 6700 | – | 512 (6) |
L1_Cs2_II | 5686 | 8.7 ± 0.40 | 4.8 ± 0.33 | 33.5 (31.9–35.0) | – | 2372 | – | 140 (4) |
L1_Cs2_III | 5518 | 9.5 ± 0.40 | 4.9 ± 0.24 | 36.5 (35.0–38.1) | – | 1716 | – | 46 (12) |
L1_Perissodactyla2_I | 6127 | 13.90 ± 0.40 | 7.27 ± 0.29 | 53.5 (51.9–55.0) | 9208 | 6572 | 476 (78) | 312 (6) |
L1_Cs3_I | 6218 | 5.8 ± 0.30 | 3.0 ± 0.16 | 22.3 (21.2–23.5) | – | 2755 | – | 234 (1) |
L1_Ec4_I | 6997 | 3.60 ± 0.20 | 1.95 ± 0.12 | 13.8 (13.1–14.6) | 2622 | – | 141 (13) | – |
L1_Ec4_II | 6993 | 8.00 ± 0.40 | 4.38 ± 0.24 | 30.8 (29.2–32.3) | 4150 | – | 316 (40) | – |
L1_Ec4_III | 7014 | 9.90 ± 0.40 | 5.34 ± 0.26 | 38.1 (36.5–39.6) | 6549 | – | 251 (21) | – |
L1_Perissodactyla4_I | 7048 | 11.30 ± 0.40 | 5.99 ± 0.27 | 43.5 (41.9–45.0) | 9944 | 38,189 | 661 (89) | 1683 (12) |
L1_Perissodactyla4_II | 5896 | 17.2 ± 0.50 | 8.9 ± 0.27 | 66.2 (64.2–68.1) | 9002 | 8807 | 94 (18) | 127 (1) |
L1_Perissodactyla5_I | 5801 | 11.3 ± 0.40 | 6.4 ± 0.36 | 43.5 (41.9–45.0) | 17,202 | 15,912 | 277 (33) | 293 (2) |
L1_Perissodactyla6_I | 5828 | 16.40 ± 0.50 | 9.0 ± 0.39 | 63.1 (61.2–65.0) | 13,988 | 13,692 | 274 (12) | 308 (6) |
L1_Perissodactyla7_I | 6498 | 18.10 ± 0.60 | 10.7 ± 0.61 | 69.6 (67.3–71.9) | 17,578 | 16,921 | 323 (11) | 404 (10) |