Recently integrated Alu insertions in the squirrel monkey (Saimiri) lineage and application for population analyses

Table 2 PCR validation results for each Alu subfamily

	Subfamily	N	Fixed	Polymorphic		Subfamily	N	Fixed	Polymorphic
1	sf36	14	10	4	25	subfam15	5	4	1
2	sf37	12	10	2	26	subfam17	1	1	0
3	sf38	16	11	5	27	subfam18	1	1	0
4	sf42	24	15	9	28	subfam2	3	3	0
5	sf44	17	14	3	29	subfam21	1	1	0
6	sf46	15	9	6	30	subfam26	11	9	2
7	sf47	11	7	4	31	subfam27	1	1	0
8	sf51	16	8	8	32	subfam29	6	4	2
9	sf52	17	14	3	33	subfam30	1	1	0
10	sf53	3	2	1	34	subfam32	15	11	4*
11	sf62	12	7	5	35	subfam36	12	7	5
12	sf63	16	11	5	36	subfam37	4	4	0
13	sf65	1	1	0	37	subfam39	5	4	1
14	sf66	13	10	3	38	subfam4	7	5	2
15	sf71	14	12	2	39	subfam43	8	7	1
16	sf73	11	5	6	40	subfam45	3	3	0
17	sf82	15	10	5	41	subfam47	1	1	0
18	sf85	3	1	2	42	subfam5	9	5	4
19	sf86	11	9	2	43	subfam7	1	1	0
20	subfam0	9	6	3	44	subfam9	4	3	1
21	subfam11	3	1	2*	45	Ta10	5	5	0
22	subfam12	12	7	5	46	Ta15	5	4	1*
23	subfam13	2	2	0
24	subfam14	6	5	1	Total		382	272	110

*Three loci in the polymorphic column, L-21071-subfam11, L-38701-subfam32 and L-19471-Ta15, were homozygous absent for the Alu in all 32 squirrel monkey samples on the DNA panel