|  |  |  | tfs ICE present in reference H. pylori genomes and gene annotationa | ||||
---|---|---|---|---|---|---|---|---|
 |  |  |  | tfs4 | tfs3 | |||
tfs gene assignmentb (t3_ or t4_) | tfs segment | Gene homologue | pz homologuec | P12 (L2C1R2) | Shi470 (L1C1R1) | SouthAfrica7 (LmC2R2) | Gambia 94/24 | India7 |
C1.1/C1.2 | tfs4 Left (L1/L2)Â and tfs3 Left segment | xer | 40 | 437 | 4480 | 7710 | 7345 | 3725 |
V1 | – | 37 | 438 | – | 7705 | 7360 | NA | |
C2.1/C2.2 | virB6 | 34 | 439 | 4485 | 7700 | 7375 | 3760 | |
V2 | – | – | 440 | – | 7695 | – | – | |
C3.1/C3.2 | – | 35 | 441 | 4490 | 7690 | 7370 | 3755 | |
C4.1/C4.2 | – | 15 | 442, 443 | 4495 | 7685 | 7480 | 3850 | |
C5.1/C5.2 | – | 32 | 444 | 4500 | NA | 7385 | 3770 | |
C6.1/C6.2 | – | 31 | 446 | 4505 | 7670 | 7390 | 3775 | |
V3 | – | – | NA | – | – | – | – | |
V4 | tfs4 Central (C1/C2)Â and tfs3 Left and Right segments | methylase | 21 | 447 | 4510 | 7665 | NA | 3820 |
C7 | virC1 | 29 | 448 | 4515 | 7660 | 7400 | 3785 | |
C8 | – | 28 | 449 | 4520 | 7655 | 7405 | 3790 | |
V5 | – | – | 450 | 4525 | – | – | – | |
C9.1/C9.2 | virD2 | 41 | 451 | 4530 | 7650 | 7340 | 3720 | |
V6 | – | – | – | – | 7640 | – | – | |
V7 | – | – | 452 | 4535 | – | – | – | |
V8 | – | – | 453 | 4540 | – | – | – | |
C10.1/C10.2 | virD4 | 20 | 454 | 4545 | 7635 | 7455 | 3825 | |
V9 | – | 20 | 455 | 4550 | 7635 | – | – | |
V10 | – | – | 456 | 4555 | – | – | – | |
V11 | – | – | – | – | 7630 | – | – | |
V12.1/V12.2 | – | – | 457 | 4560 | 7625 | – | – | |
C11.1/C11.2 | virB11 | 18 | 458 | 4565 | 7620 | 7465 | 3835 | |
V13 | – | – | 459 | 4570 | – | – | – | |
V14 | – | – | – | – | 7615 | – | – | |
V15 | – | – | 460 | 4575 | – | – | – | |
V16 | – | – | – | – | 7610 | – | – | |
V17 | – | – | 461 | 4580 | 7605 | – | – | |
V18 | – | – | – | 4585 | – | – | – | |
C12 | virB10 | 14 | 462 | 4590 | 7600 | 7485 | 3855 | |
C13 | virB9 | 13 | 463 | 4595 | 7595 | 7490 | 3860 | |
C14.1/C14.2 | tfs4 Right (R1/R2)Â and tfs3 Right segment | virB8 | 12 | 464 | 4600 | 7590 | 7495 | 3865 |
C15.1/C15.2 | virB7 | 11 | 465 | 4605 | NA | 7500 | 3870 | |
C16.1/C16.2 | topA | 24 | 466 | 4610 | 7585, 7570 | 7425 | 3810 | |
C17.1/C17.2 | virB4 | 10 | 467 | 4615 | 7565 | 7505 | 3875 | |
C18.1/C18.2 | virB3 | 8 | 468 | 4620 | 7560 | 7515 | 3885 | |
C19.1/C19.2 | virB2 | 7 | 469 | 4625 | 7555 | 7520 | 3890 | |
C20.1/C20.2 | – | 33 | 471 | 4630-35 | 7550 | 7380 | 3765 | |
V19 | – | – | 472 | – | 7545 | – | – | |
C21.1/C21.2 | – | 5 | 473 | 4640 | 7540 | 7535 | 3900 | |
V20 | tfs3 Left segment | – | 39 | – | – | – | 7350 | 3730 |
V21 | – | 38 | – | – | – | 7355 | 3735 | |
V22.1/V22.2 | fic | – | – | – | – | – | – | |
V23 | ctkA | – | – | – | – | – | – | |
V24.1-V24.4 | – | 36 | – | – | – | 7365 | 3750 | |
V25.1-V25.3 | – | 30 | – | – | – | 7395 | 3780 | |
V26 | – | 27 | – | – | – | 7410 | 3795 | |
V27 | – | 26 | – | – | – | 7415 | 3800 | |
V28 | – | 25 | – | – | – | 7420 | 3805 | |
V29 | tfs3 Central variable | – | 23 | – | – | – | 7430 | 3815 |
V30 | – | – | – | – | – | NA | – | |
V31 | – | 22 | – | – | – | 7435 | – | |
V32 | – | – | – | – | – | 7440 | – | |
V33 | tfs3 Right segment | – | 19 | – | – | – | 7460 | 3830 |
V34 | – | 17 | – | – | – | 7470 | 3840 | |
V35 | – | 16 | – | – | – | 7475 | 3845 | |
V36.1-V36.3 | – | 9 | – | – | – | 7510 | 3880 | |
V37 | – | 6 | – | – | – | 7525 | 3895 | |
V38 | – | – | – | – | – | 7530 | NA |