Human transposable elements in Repbase: genomic footprints from fish to humans

Table 2 TE classification in Repbase

Class	Clade/Superfamily^a
Non-LTR retrotransposon	Ambal, *CR1* , CRE, *Crack* , Daphne, Hero, I, Ingi, Jockey, Kiri, L1 , L2 , L2A, L2B, Loa, NeSL, Nimb, Outcast, *Penelope* , Proto1, Proto2, R1, R2, R4 , RandI/Dualen, Rex1, *RTE* , RTETP, *RTEX* , Tad1, *Tx1* , *Vingi* , *SINE* ( *SINE1/7SL* , *SINE2/tRNA* , *SINE3/5S* , SINEU)
LTR retrotransposon	BEL, Copia, *DIRS* , *Gypsy* , *Endogenous retrovirus* ( *ERV1* , *ERV2* , *ERV3* , ERV4, Lentivirus)
DNA transposon	Academ, *Crypton* ( *CryptonA* , CryptonF, CryptonI, CryptonS, CryptonV), Dada, EnSpm/CACTA, *Ginger1* , Ginger2/TDD, *Harbinger* , *hAT* , *Helitron* , IS3EU, ISL2EU, *Kolobok* , *Mariner/Tc1* , *Merlin* , *MuDR* , Novosib, P , *piggyBac* , Polinton, Sola (Sola1, Sola2, Sola3), *Transib* , Zator, Zisupton

^aBold faces of clades/superfamilies show the presence of their traces (as repeats and/or domesticated genes) in the human genome

ISSN: 1759-8753