The repetitive landscape of the 5100 Mbp barley genome

Table 1 Copy number estimates of the most abundant Class 1 and Class 2 element families in the barley genome

TE family	Superfamily	Total kb^a	Length^b	Copy number^c
RLC_BARE1	Copia	623,043	8630	72,195
RLG_Sabrina	Gypsy	407,047	8030	50,691
RLG_BAGY2	Gypsy	240,798	8630	27,902
RLG_WHAM	Gypsy	167,138	9450	17,687
RLG_Surya	Gypsy	163,300	14,470	11,285
RLC_Maximus	Copia	110,928	14,400	7703
RLG_BAGY1	Gypsy	102,843	14,400	7142
DTC_Balduin	CACTA	70,688	11,740	6021
RLG_Haight	Gypsy	57,185	13,080	4372
DTC_Caspar	CACTA	54,465	11,568	4708
Total		1,997,435		209,707
DTT_Thalos	Mariner	2865	163	17,574
DTT_Pan	Mariner	716	123	5822
DTT_Athos	Mariner	394	81	4868
DTT_Icarus	Mariner	555	117	4747
DTT_Hades	Mariner	392	108	3627
DTT_SAF	Mariner	177	85	2087
DTT_Eos	Mariner	506	326	1552
DTT_Oleus	Mariner	231	150	1540
DTT_Pluto	Mariner	328	274	1197
DTT_Stolos	Mariner	205	274	749
Total		6369		43,763
DTH_Thorne	Harbinger	716	273	2624
DTH_Kerberos	Harbinger	594	285	2086
DTH_Xumet	Harbinger	591	376	1571
DTH_Rong	Harbinger	1218	1227	993
DTT_Marimom	Harbinger	2024	2129	951
DTH_Orpheus	Harbinger	183	272	674
DTH_Xenon	Harbinger	203	312	650
DTH_Xian	Harbinger	650	1161	560
DTH_Kong	Harbinger	489	2119	231
DTH_Tibone	Harbinger	187	1037	180
DTH_Zong	Harbinger	278	2396	116
Total		7133		10,634

^aTotal kb annotated as respective family-specific
^bLength of the reference TE that was used for annotation
^cCopy number estimate based on total kb occupied by the TE family and length of its consensus sequence

ISSN: 1759-8753