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Table 1 Copy number estimates of the most abundant Class 1 and Class 2 element families in the barley genome

From: The repetitive landscape of the 5100 Mbp barley genome

TE family Superfamily Total kba Lengthb Copy numberc
RLC_BARE1 Copia 623,043 8630 72,195
RLG_Sabrina Gypsy 407,047 8030 50,691
RLG_BAGY2 Gypsy 240,798 8630 27,902
RLG_WHAM Gypsy 167,138 9450 17,687
RLG_Surya Gypsy 163,300 14,470 11,285
RLC_Maximus Copia 110,928 14,400 7703
RLG_BAGY1 Gypsy 102,843 14,400 7142
DTC_Balduin CACTA 70,688 11,740 6021
RLG_Haight Gypsy 57,185 13,080 4372
DTC_Caspar CACTA 54,465 11,568 4708
Total   1,997,435   209,707
DTT_Thalos Mariner 2865 163 17,574
DTT_Pan Mariner 716 123 5822
DTT_Athos Mariner 394 81 4868
DTT_Icarus Mariner 555 117 4747
DTT_Hades Mariner 392 108 3627
DTT_SAF Mariner 177 85 2087
DTT_Eos Mariner 506 326 1552
DTT_Oleus Mariner 231 150 1540
DTT_Pluto Mariner 328 274 1197
DTT_Stolos Mariner 205 274 749
Total   6369   43,763
DTH_Thorne Harbinger 716 273 2624
DTH_Kerberos Harbinger 594 285 2086
DTH_Xumet Harbinger 591 376 1571
DTH_Rong Harbinger 1218 1227 993
DTT_Marimom Harbinger 2024 2129 951
DTH_Orpheus Harbinger 183 272 674
DTH_Xenon Harbinger 203 312 650
DTH_Xian Harbinger 650 1161 560
DTH_Kong Harbinger 489 2119 231
DTH_Tibone Harbinger 187 1037 180
DTH_Zong Harbinger 278 2396 116
Total   7133   10,634
  1. aTotal kb annotated as respective family-specific
  2. bLength of the reference TE that was used for annotation
  3. cCopy number estimate based on total kb occupied by the TE family and length of its consensus sequence