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Table 3 HML10 sequences orthologous loci in non-human primates genome

From: Identification of a novel HERV-K(HML10): comprehensive characterization and comparative analysis in non-human primates provide insights about HML10 proviruses structure and diffusion

Human locus

Chimpanzee

Gorilla

Orangutan

Gibbon

Rhesus

Marmoset

1p36.13 (−)

1:19,897,252–19,903,183 (−)

1:20,573,241–20,579,060 (−)

1:210,407,411–210,413,307 (+)

24:19,115,921–19,117,286 (−)

1:22,729,037–22,740,752 (−)

x

1p22.2 (−)

1:89,883,243–89,885,583(−)

x

1:139,752,930–139,755,294 (+)

12:87,503,425–87,505,758

1:92,543,319–92,545,983 (−)

x

1q22 (−)

1:133,941,236–133,948,931 (−)

1:134,686,645–134,687,185 (−)

1:95,817,622–95,818,162 (+)

assembly gap

1:134,772,475–134,779,343 (−)

x

6p22.1 (+)

6:27,446,871–27,456,058 (+)

6:28,001,913–28,010,233 (+)

6:28,071,758–28,078,582 (+)

1a:72,438,487–72,447,474 (+)

4:27,112,448–27,121,339 (+)

x

6p21.33a (−)

x

x

x

x

4:32,223,558–32,230,572 (−)

x

6p21.33b (−)

x

x

6:32,500,019–32,506,424 (−)

x

x

x

6q22.31 (−)

6:123,707,066–123,714,005 (−)

6:122,872,935–122,879,489 (−)

6:125,032,218–125,039,364 (−)

3:109,711,272–109,718,216 (−)

4:143,675,558–143,676,403 (−)

x

19p13.2 (−)

19:7,923,717–7,929,241 (−)

19:8,020,313–8,024,861 (−)

19:7,962,003–7,966,295 (−)

10:66,445,268–66,447,647 (+)

19:8,140,869–8,144,331 (+)

x

19q13.41 (−)

19:57,389,749–57,395,370 (−)

19:49,869,509–49,875,109 (−)

19:53,964,824–53,970,559 (−)

10:72,725,038–72,730,734 (−)

19:58,261,760–58,267,798 (−)

x

Yq11.221 (−)

Y:20,496,417–20,503,728 (−)

  1. For each human HML10 locus (for precise start and end positions, see Table 1), chromosome coordinates and strand of orthologous loci are given for the other regarded non-human Catarrhini primate reference genome sequences. Apparent absence of a HML10 sequence in the orthologous genome position is indicated by “x”. Regarding the HML10 locus on the human chromosome Y, comparative information is available for chimpanzee genome sequence only (see main text)