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Table 1 HML10 proviral sequences localized in the human genome GRCh37/hg19 assembly

From: Identification of a novel HERV-K(HML10): comprehensive characterization and comparative analysis in non-human primates provide insights about HML10 proviruses structure and diffusion

Locus

Coordinates a

Length

First reference

RVNR b

Genomic context

Secondary integrations

1p36.13

1:20,253,380–20,259,203 (−)

5824

Vargiu 2016

5836

intergenic

–

1p22.2

1:89,551,973–89,554,309

2337

this study

–

intergenic

–

1q22

1:155,661,620–155,669,312 (−)

7693

Vargiu 2016

6073

DAP3 (+)

L1 MB7 (−)

AluSp 155,663,467–155,663,784 (+)

MER11 155,667,171–155,668,256 (−)

6p22.1

6:27,155,300–27,164,058 (+)

8759

Vargiu 2016

2101

intergenic

AluY 27,158,573–27,158,903 (+)

AluYc 27,158,904–27,159,195 (+)

AluY 27,159,341–27,159,663 (+)

AluY 27,159,784–27,160,001 (−)

LTR13A 27,162,010–27,163,209 (−)

6p21.33

a) 6:31,952,469–31,958,829 (−)

6361

Tassabehji 1994

2116

C4A (+)

–

b) 6:31,985,207–31,991,567 (−)

6361

Tassabehji 1994

2115

C4B (+)

–

6q22.31

6:122,825,990–122,833,238 (−)

7249

Vargiu 2016

2320

PKIB (+)

AluY 122,827,840–122,828,145 (−)

AluY 122,829,905–122,830,202 (−)

AluY 122,830,590–122,830,893 (−)

19p13.2

19:7,860,947–7,865,932 (−)

4986

Vargiu 2016

4599

intergenic

AluY 7,861,800–7,862,107 (−)

AluY 7,862,886–7,863,179 (+)

AluY 7,863,787–7,864,090 (−)

AluY 7,865,512–7,865,832 (+)

19q13.41

19:52,964,148–52,969,750 (−)

5458

Vargiu 2016

4762

ZNF578 (+)

–

Yq11.221

Y:15,105,784–15,113,006 (−)

7223

Vargiu 2016

5104

L1M3f (−)

LTR2B 15,106,449–15,106,924 (−)

AluY 15,111,205–15,111,507 (−)

  1. aChromosome: start-end (strand). Positions are referred to the human genome sequence, assembly GRCh37/hg19
  2. bIndividual sequences identifiers in the first reference study (Vargiu et al. 2016, [3])