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Table 2 Avian genomes with galluhop and characteristics of copies

From: Evolutionary history of the mariner element galluhop in avian genomes

Partial elements (160–1200 bp)b

Non-autonomous elements (~500–600 bp)

Full-length elements (~1200–1300 bp)

ORFsa

No. of copies

Assembly size (Mb)

Species

Order

29

9927

202

N

10,158

1046.93

G. gallus

Galliformes

0

8187

130

N

8317

1061.82

M. gallopavo

Galliformes

28

61

7

N

96

1171.86

C. virginianus

Galliformes

76

19

1

N

96

657.025c

L. tetrix

Galliformes

0

4

0

N

4

531.96c

C. japônica

Galliformes

0

14

0

N

14

1065.78

B. rhinocerus

Buceritiformes

  1. aNo ORFs were found in the analyzed elements
  2. bPartial elements are copies with a missing TIR and ORFs <= 300 aa
  3. c L. tetrix and C. japonica genomes have a smaller assembly size than most avian genomes, since they are only partially assembled. A new assembly version of the C. japonica genome is available, with a higher assembly size of 927.657 Mb – GCA_000511605.2, but it was not used in our study since it was released after we conducted all analyses in the previous assembly version