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Table 1 Diversity, distribution, and the number of aRNH and fmRNH domains in the studied oomycete species

From: Convergence of retrotransposons in oomycetes and plants

Taxonomic position according to the NCBI taxonomy RT-associated RNHs number Individual RNHs number
Order Family Genus Species Chronos Archon L1 Utopia aRNH fmRNH
aRNH 1 aRNH 2 aRNH 3
Albuginales Albuginaceae Albugo A. candida - - - - - - - 2
    A. laibachii - - - - - - - 1
Peronosporales Peronosporaceae Hyaloperonospora H. arabidopsidis Emoy2 57 - 88 - - 1 - 1
   Phytophthora P. alni 106 - 3 2 4 - - 7
    P. capsici 64 - 14 16 1 1 - 1
    P. cinnamomi var cinnamomi 92 - 3 5 - 1 - 1
    P. infestans T30-4 1555 - 43 25 - 1 - 2
    P. kernovia 00238/432 3 - - 1 - 1 - 1
    P. lateralis MPF4 30 - 7 5 - 1 - 2
    P. parasitica P1569 11 - - 1 1 1 - 4
    P. pinifolia CBS 122922 75 - 26 2 8 2 - 2
    P. ramorum 120 - 11 14 - 1 - 3
    P. sojae 271 - 35 31 2 1 - 4
    Average 233 - 18 10 3 1 - 3
   Phytopythium P. vexans 1 - - 1 - 1 - 2
   Pseudoperonospora P. cubensis MSU-1 - - - - - - - 1
Pythiales Pythiaceae Pythium P. aphanidermatum 5 - 3 - - 1 - 1
    P. arrhenomanes 5 - 5 2 - 1 - 1
    P. insidiosum 33 - 43 2 - 1 - 1
    P. irregulare 1 - - 1 - 1 - 2
    P. iwayamai 1 - 3 - - 1 - 2
    P. ultimum var. ultimum - - 74 7 - 1 - 2
    Average 9 - 26 3 - 1 - 2
Saprolegniales Saprolegniaceae Aphanomyces A. astaci APO3.2 1 - - - - - 3 1
    A. invadans 9901.2 - - - - - - - 1
    Average 1 - - - - - 3 1
   Saprolegnia S. diclina VS20 - 3 - 1 - 1 10 1
    S. parasitica CBS 223.65 - 2 - - - 1 4 1
    Average - 3 - 1 - 1 7 1