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Table 1 Diversity, distribution, and the number of aRNH and fmRNH domains in the studied oomycete species

From: Convergence of retrotransposons in oomycetes and plants

Taxonomic position according to the NCBI taxonomy

RT-associated RNHs number

Individual RNHs number

Order

Family

Genus

Species

Chronos

Archon

L1

Utopia

aRNH

fmRNH

aRNH 1

aRNH 2

aRNH 3

Albuginales

Albuginaceae

Albugo

A. candida

-

-

-

-

-

-

-

2

   

A. laibachii

-

-

-

-

-

-

-

1

Peronosporales

Peronosporaceae

Hyaloperonospora

H. arabidopsidis Emoy2

57

-

88

-

-

1

-

1

  

Phytophthora

P. alni

106

-

3

2

4

-

-

7

   

P. capsici

64

-

14

16

1

1

-

1

   

P. cinnamomi var cinnamomi

92

-

3

5

-

1

-

1

   

P. infestans T30-4

1555

-

43

25

-

1

-

2

   

P. kernovia 00238/432

3

-

-

1

-

1

-

1

   

P. lateralis MPF4

30

-

7

5

-

1

-

2

   

P. parasitica P1569

11

-

-

1

1

1

-

4

   

P. pinifolia CBS 122922

75

-

26

2

8

2

-

2

   

P. ramorum

120

-

11

14

-

1

-

3

   

P. sojae

271

-

35

31

2

1

-

4

   

Average

233

-

18

10

3

1

-

3

  

Phytopythium

P. vexans

1

-

-

1

-

1

-

2

  

Pseudoperonospora

P. cubensis MSU-1

-

-

-

-

-

-

-

1

Pythiales

Pythiaceae

Pythium

P. aphanidermatum

5

-

3

-

-

1

-

1

   

P. arrhenomanes

5

-

5

2

-

1

-

1

   

P. insidiosum

33

-

43

2

-

1

-

1

   

P. irregulare

1

-

-

1

-

1

-

2

   

P. iwayamai

1

-

3

-

-

1

-

2

   

P. ultimum var. ultimum

-

-

74

7

-

1

-

2

   

Average

9

-

26

3

-

1

-

2

Saprolegniales

Saprolegniaceae

Aphanomyces

A. astaci APO3.2

1

-

-

-

-

-

3

1

   

A. invadans 9901.2

-

-

-

-

-

-

-

1

   

Average

1

-

-

-

-

-

3

1

  

Saprolegnia

S. diclina VS20

-

3

-

1

-

1

10

1

   

S. parasitica CBS 223.65

-

2

-

-

-

1

4

1

   

Average

-

3

-

1

-

1

7

1