From: Considerations and complications of mapping small RNA high-throughput data to transposable elements
library | sRNA length | # of locations for sRNAs of the six familiesa | # of genomic loci for exon sRNAsa | # of genomic loci for other sRNAsa | ||
---|---|---|---|---|---|---|
genome | annotated TE population | TE exemplars | ||||
leaf | 21 | 283 – 1397 | 66 – 298 | 3 – 5 | 4 – 12 | 5 – 37 |
22 | 262 – 1261 | 70 – 284 | 3 – 5 | 4 – 11 | 5 – 42 | |
24 | 82 – 613 | 11 – 121 | 3 – 4 | 4 – 12 | 4 – 21 | |
all | 127 – 854 | 18 – 179 | 3 – 4 | 4 – 11 | 4 – 26 | |
tassel | 21 | 425 – 2033 | 114 – 419 | 3 – 5 | 4 – 18 | 6 – 57 |
22 | 380 – 1615 | 118 – 369 | 3 – 5 | 4 – 15 | 7 – 60 | |
24 | 199 – 1017 | 26 – 194 | 3 – 4 | 5 – 17 | 4 – 25 | |
all | 277 – 1353 | 60 – 281 | 3 – 5 | 5 – 17 | 4 – 34 | |
ear | 21 | 513 – 2130 | 86 – 411 | 4 – 5 | 4 – 14 | 6 – 55 |
22 | 454 – 1748 | 83 – 359 | 4 – 5 | 4 – 15 | 7 – 56 | |
24 | 147 – 897 | 19 – 170 | 3 – 5 | 4 – 17 | 5 – 26 | |
all | 219 – 1231 | 31 – 241 | 3 – 5 | 4 – 16 | 5 – 32 |