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Table 1 Number of locations for M_sRNAs that mapped to different parts of the maize genome

From: Considerations and complications of mapping small RNA high-throughput data to transposable elements

library

sRNA length

# of locations for sRNAs of the six familiesa

# of genomic loci for exon sRNAsa

# of genomic loci for other sRNAsa

genome

annotated

TE population

TE exemplars

leaf

21

283 – 1397

66 – 298

3 – 5

4 – 12

5 – 37

22

262 – 1261

70 – 284

3 – 5

4 – 11

5 – 42

24

82 – 613

11 – 121

3 – 4

4 – 12

4 – 21

all

127 – 854

18 – 179

3 – 4

4 – 11

4 – 26

tassel

21

425 – 2033

114 – 419

3 – 5

4 – 18

6 – 57

22

380 – 1615

118 – 369

3 – 5

4 – 15

7 – 60

24

199 – 1017

26 – 194

3 – 4

5 – 17

4 – 25

all

277 – 1353

60 – 281

3 – 5

5 – 17

4 – 34

ear

21

513 – 2130

86 – 411

4 – 5

4 – 14

6 – 55

22

454 – 1748

83 – 359

4 – 5

4 – 15

7 – 56

24

147 – 897

19 – 170

3 – 5

4 – 17

5 – 26

all

219 – 1231

31 – 241

3 – 5

4 – 16

5 – 32

  1. aThe median (left) and average (right) number of mapping locations are shown for each category