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Table 1 Number of locations for M_sRNAs that mapped to different parts of the maize genome

From: Considerations and complications of mapping small RNA high-throughput data to transposable elements

library sRNA length # of locations for sRNAs of the six familiesa # of genomic loci for exon sRNAsa # of genomic loci for other sRNAsa
genome annotated
TE population
TE exemplars
leaf 21 283 – 1397 66 – 298 3 – 5 4 – 12 5 – 37
22 262 – 1261 70 – 284 3 – 5 4 – 11 5 – 42
24 82 – 613 11 – 121 3 – 4 4 – 12 4 – 21
all 127 – 854 18 – 179 3 – 4 4 – 11 4 – 26
tassel 21 425 – 2033 114 – 419 3 – 5 4 – 18 6 – 57
22 380 – 1615 118 – 369 3 – 5 4 – 15 7 – 60
24 199 – 1017 26 – 194 3 – 4 5 – 17 4 – 25
all 277 – 1353 60 – 281 3 – 5 5 – 17 4 – 34
ear 21 513 – 2130 86 – 411 4 – 5 4 – 14 6 – 55
22 454 – 1748 83 – 359 4 – 5 4 – 15 7 – 56
24 147 – 897 19 – 170 3 – 5 4 – 17 5 – 26
all 219 – 1231 31 – 241 3 – 5 4 – 16 5 – 32
  1. aThe median (left) and average (right) number of mapping locations are shown for each category