No. | Chr.band | Coordinates (strand) | Structure | TSD | Integrated REs | Position | RefSeq genes (rel. orientation) | RefSeq genes ± 10,000 bp |
---|---|---|---|---|---|---|---|---|
1 | 1p36.13 | chr1:19926886-19932710 (-) | Provirus | WWAAAT | - | Intergenic | - | PLA2G2E |
2 | 1p35.3 | chr1:29156730-29157306 (-) | LTR | GTTAC | - | Intronic | SFRS4 (s) | - |
3 | 1q22 | chr1:155691832-155699521 (-) | Provirus | ATTAAG | AluSp; MER11B | Intronic | DAP3 (as) | YY1AP1 |
4 | 1q23.1 | chr1:158534566-158535143 (+) | LTR | GTCCAA | - | Intergenic | - | - |
5 | 1q32.3 | chr1:213045116-213046160 (-) | LTRa | TAGTGG | - | Intergenic | - | RPS6KC1 |
6 | 2p11.2 | chr2:86245199-86245755 (+) | LTR | TATAC | - | Intronic | REEP1 (as) | - |
7 | 2q37.3 | chr2:238659222-238659778 (+) | LTR | not found | - | Intergenic | - | - |
8 | 2q37.3 | chr2:240556198-240556747 (+) | LTR | not found | - | Intronic | ANKMY1 (as) | DUSP28 |
9 | 3p14.2 | chr3:58724279-58724839 (+) | LTR | CAGCAG | - | Intergenic | - | - |
10 | 3q12.2 | chr3:101089113-101089658 (+) | LTR | AGGCAC | - | Intergenic | - | - |
11 | 3q21.3 | chr3:128828801-128835173 (+) | LTR | TGCAT | AluY; LTR7B; HERVH | Intergenic | - | - |
12 | 3q24 | chr3:146283898-146284161 (-) | LTRb | not found | - | Intergenic | - | - |
13 | 4p16.3 | chr4:1709255-1710065 (+) | LTR | ATGGGG | AluY | Intronic | SLBP (as) | TMEM129 |
14 | 4p16.1 | chr4:8441728-8442282 (-) | LTR | YYTTTA | - | Intronic | TRMT (as) | ACOX3 |
15 | 4q31.21 | chr4:143777776-143778330 (+) | LTR | TCARCC | - | Intergenic | - | - |
16 | 5q14.1 | chr5:78245022-78245575 (-) | LTR | TCYWCA | - | Intronic | AP3B1 (s) | - |
17 | 5q14.1 | chr5:78248004-78248093 (-) | LTRb | not found | - | Intronic | AP3B1 (s) | - |
18 | 5q31.3 | chr5:142088759-142089306 (-) | LTR | TTGGTG | - | Intergenic | -- | - |
19 | 6p24.1 | chr6:12989575-12990131 (-) | LTR | GAAAAC | - | Intronic | PHACTR1 (as) | - |
20 | 6p22.1 | chr6:27187520-27196279 (+) | Provirus | AAGATM | 3× AluY; AluYc; LTR13A | Intergenic | - | - |
21 | 6p22.1 | chr6:28607908-28608446 (+) | LTR | CATGTT | - | Intergenic | - | - |
22 | 6p21.33 | chr6:31984691-31991052 (-) chr6:32017429-32023790 (-) | Provirus | TGTCTG TGTCTG | - | Intronic | C4A/C4B (as) | CYP21A1P; STK19; TNXB |
23 | 6p21.32 | chr6:32512829-32513385 (+) | LTR | GGGGRG | - | Intergenic | - | HLA-DRB5 |
24 | 6q21 | chr6:114011436-114018365 (+) | LTR | CCCTAT | LTR7B; HERVH | Intergenic | - | - |
25 | 6q22.31 | chr6:122504844-122512093 (-) | Provirus | GGACAT | 3× AluY | Intronic | PKIB (as) | - |
26 | 7q36.2 | chr7:154936774-154937317 (-) | LTR | ACTCCA | - | Intronic | PAXIP1 (as) | PAXIP1-AS2 |
27 | 8p22 | chr8:17915846-17916036 (-) | LTRb | CCCMTA | - | Intergenic | - | PCM1 |
28 | 8p21.3 | chr8:22985089-22985644 (-) | LTR | CCTCYY | - | Intergenic | - | RHOBTB2 |
29 | 8q11.1 | chr8:46533684-46534254 (+) | LTR | CATTTC | - | Intergenic | - | - |
30 | 8q21.13 | chr8:82206225-82206776 (+) | LTR | CASCCK | - | Intergenic | - | - |
31 | 9p13.3 | chr9:34539821-34540365 (-) | LTR | GGCATG | - | Intergenic | - | - |
32 | 9q22.1 | chr9:87984145-87984721 (-) | LTR | TATGGC | - | Intergenic | - | CDK20 |
33 | 9q22.31 | chr9:92523403-92523958 (-) | LTR | WATTGT | - | Intronic | CENPP (as); ECM2 (s) | - |
34 | 9q31.3 | chr9:109072071-109072632 (+) | LTR | CMAAAG | - | Intronic | TMEM245 (as) | - |
35 | 9q34.11 | chr9:129101280-129101834 (+) | LTR | GGGGAA | - | Intronic | CRAT (as) | PPP2R4 |
36 | 9q34.13 | chr9:132289026-132289571 (+) | LTR | CTCTYA | - | Intronic | SETX (as) | - |
37 | 10p11.21 | chr10:37685164-37685717 (+) | LTR | GAATC | - | Intergenic | - | - |
38 | 11p11.2 | chr11:43747422-43747974 (+) | LTR | GTTCTG | - | Intronic | HSD17B12 (s) | - |
39 | 12p13.1 | chr12:12810288-12810845 (-) | LTR | ATCTA | - | Intergenic | - | DDX47 |
40 | 12q24.33 | chr12:132949015-132949570 (+) | LTR | GTATC | - | Intronic | ZNF605 (as) | - |
41 | 13q13.3 | chr13:37090225-37090778 (+) | LTR | CCTGTT | - | Intergenic | - | - |
42 | 14q31.1 | chr14:79706443-79707024 (+) | LTR | TTGGTC | - | Intronic | NRXN3 (s) | - |
43 | 16p13.13 | chr16:10785748-10785943 (+) | LTRb | not found | - | Intronic | FAM18A (as) | - |
44 | 16p13.13 | chr16:10788495-10789043 (-) | LTR | GAGAYC | - | Intronic | FAM18A (s) | - |
45 | 17p13.1 | chr17:8056835-8057031 (+) | LTRb | not found | - | Intergenic | - | ALOX15B |
46 | 17p13.1 | chr17:8082291-8082848 (+) | LTR | CCAGG | - | Intronic | ALOX12B (as) | MIR4314 |
47 | 17q11.2 | chr17:32913177-32913734 (+) | LTR | GGTATR | - | Intergenic | - | - |
48 | 19p13.3 | chr19:2863773-2863865 (+) | LTRb | not found | - | Intergenic | - | ZNF555; ZNF556 |
49 | 19p13.2 | chr19:7100429-7100974 (-) | LTR | GTCTC | - | Intergenic | - | - |
50 | 19p12 | chr19:21987441-21988020 (+) | LTR | ATAAYA | - | Intronic | ZNF208 (as) | - |
51 | 19p12 | chr19:23876577-23877146 (-) | LTR | CTCCCC | - | Intergenic | - | - |
52 | 19q13.11 | chr19:34595165-34595718 (-) | LTR | TGTAGG | - | Intergenic | - | SCGBL |
53 | 19q13.12 | chr19:36636542-36637090 (-) | LTR | not found | - | Intergenic | - | ZNF382; ZNF461 |
54 | 19q13.2 | chr19:42667555-42668111 (-) | LTR | GTGTG | - | Intergenic | - | - |
55 | 19q13.31 | chr19:44283216-44283766 (-) | LTR | GTAAG | - | Intergenic | - | ZNF233; ZNF235 |
56 | 19q13.32 | chr19:46030891-46031467 (+) | LTR | CAAGGT | - | Intergenic | - | IGFL4; PGLYRP1 |
57 | 19q13.41 | chr19:51900477-51900716 (-) | LTRb | not found | - | Intronic | ZNF649 (s); ZNF619 (as) | ZNF649-AS1 |
58 | 19q13.41 | chr19:52460866-52466497 (-) | Provirusb | AAAAC | - | Intronic | ZNF578 (as) | ZNF534 |
59 | 21q22.3 | chr21:43698519-43699073 (+) | LTR | TTTAG | - | Intergenic | - | RRP1B |
60 | 21q22.3 | chr21:43738447-43739417 (+) | LTR | CTAAT | AluSx; AluY | Intronic | PDXK (as) | - |
61 | 22q11.21 | chr22:20818927-20819480 (-) | LTR | TAAGA | - | Intronic | PI4KA (s) | - |
62 | 22q13.31 | chr22:45188740-45189285 (+) | LTR | TGCAAC | - | Intergenic | - | NUP50; KIAA0930 |
63 | Xp11.23 | chrX:48047190-48047228 (-) | LTRb | not found | - | Intergenic | - | ZNF630-AS1 |
64 | Xp11.22 | chrX:51636506-51637062 (+) | LTR | GCTCTA | - | Intergenic | - | - |
65 | Xq22.2 | chrX:103469871-103470407 (-) | LTR | GRGGAG | - | Intergenic | -- | -- |
66 | Xq22.3 | chrX:107232277-107232369 (-) | LTRb | not found | - | Intronic | PIH1D3 (as) | - |
67 | Xq27.1 | chrX:139517757-139518302 (+) | LTR | CTTAAG | - | Intergenic | - | - |
68 | Yq11.221 | chrY:12993871-13001093 (-) | Provirus | TGSATT | AluY; LTR2B | Intergenic | - | - |
69 | Yq11.221 | chrY:13333756-13334302 (+) | LTR | CRYAGC | - | Intronic | UTY (as) | - |
70 | Yq11.221 | chrY:16492757-16493302 (+) | LTR | TCCAAR | - | Intergenic | - | - |