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Table 1 HML-10 elements in the human genome

From: The intron-enriched HERV-K(HML-10) family suppresses apoptosis, an indicator of malignant transformation

No. Chr.band Coordinates (strand) Structure TSD Integrated REs Position RefSeq genes (rel. orientation) RefSeq genes ± 10,000 bp
1 1p36.13 chr1:19926886-19932710 (-) Provirus WWAAAT - Intergenic - PLA2G2E
2 1p35.3 chr1:29156730-29157306 (-) LTR GTTAC - Intronic SFRS4 (s) -
3 1q22 chr1:155691832-155699521 (-) Provirus ATTAAG AluSp; MER11B Intronic DAP3 (as) YY1AP1
4 1q23.1 chr1:158534566-158535143 (+) LTR GTCCAA - Intergenic - -
5 1q32.3 chr1:213045116-213046160 (-) LTRa TAGTGG - Intergenic - RPS6KC1
6 2p11.2 chr2:86245199-86245755 (+) LTR TATAC - Intronic REEP1 (as) -
7 2q37.3 chr2:238659222-238659778 (+) LTR not found - Intergenic - -
8 2q37.3 chr2:240556198-240556747 (+) LTR not found - Intronic ANKMY1 (as) DUSP28
9 3p14.2 chr3:58724279-58724839 (+) LTR CAGCAG - Intergenic - -
10 3q12.2 chr3:101089113-101089658 (+) LTR AGGCAC - Intergenic - -
11 3q21.3 chr3:128828801-128835173 (+) LTR TGCAT AluY; LTR7B; HERVH Intergenic - -
12 3q24 chr3:146283898-146284161 (-) LTRb not found - Intergenic - -
13 4p16.3 chr4:1709255-1710065 (+) LTR ATGGGG AluY Intronic SLBP (as) TMEM129
14 4p16.1 chr4:8441728-8442282 (-) LTR YYTTTA - Intronic TRMT (as) ACOX3
15 4q31.21 chr4:143777776-143778330 (+) LTR TCARCC - Intergenic - -
16 5q14.1 chr5:78245022-78245575 (-) LTR TCYWCA - Intronic AP3B1 (s) -
17 5q14.1 chr5:78248004-78248093 (-) LTRb not found - Intronic AP3B1 (s) -
18 5q31.3 chr5:142088759-142089306 (-) LTR TTGGTG - Intergenic -- -
19 6p24.1 chr6:12989575-12990131 (-) LTR GAAAAC - Intronic PHACTR1 (as) -
20 6p22.1 chr6:27187520-27196279 (+) Provirus AAGATM 3× AluY; AluYc; LTR13A Intergenic - -
21 6p22.1 chr6:28607908-28608446 (+) LTR CATGTT - Intergenic - -
22 6p21.33 chr6:31984691-31991052 (-) chr6:32017429-32023790 (-) Provirus TGTCTG
TGTCTG
- Intronic C4A/C4B (as) CYP21A1P; STK19; TNXB
23 6p21.32 chr6:32512829-32513385 (+) LTR GGGGRG - Intergenic - HLA-DRB5
24 6q21 chr6:114011436-114018365 (+) LTR CCCTAT LTR7B; HERVH Intergenic - -
25 6q22.31 chr6:122504844-122512093 (-) Provirus GGACAT 3× AluY Intronic PKIB (as) -
26 7q36.2 chr7:154936774-154937317 (-) LTR ACTCCA - Intronic PAXIP1 (as) PAXIP1-AS2
27 8p22 chr8:17915846-17916036 (-) LTRb CCCMTA - Intergenic - PCM1
28 8p21.3 chr8:22985089-22985644 (-) LTR CCTCYY - Intergenic - RHOBTB2
29 8q11.1 chr8:46533684-46534254 (+) LTR CATTTC - Intergenic - -
30 8q21.13 chr8:82206225-82206776 (+) LTR CASCCK - Intergenic - -
31 9p13.3 chr9:34539821-34540365 (-) LTR GGCATG - Intergenic - -
32 9q22.1 chr9:87984145-87984721 (-) LTR TATGGC - Intergenic - CDK20
33 9q22.31 chr9:92523403-92523958 (-) LTR WATTGT - Intronic CENPP (as); ECM2 (s) -
34 9q31.3 chr9:109072071-109072632 (+) LTR CMAAAG - Intronic TMEM245 (as) -
35 9q34.11 chr9:129101280-129101834 (+) LTR GGGGAA - Intronic CRAT (as) PPP2R4
36 9q34.13 chr9:132289026-132289571 (+) LTR CTCTYA - Intronic SETX (as) -
37 10p11.21 chr10:37685164-37685717 (+) LTR GAATC - Intergenic - -
38 11p11.2 chr11:43747422-43747974 (+) LTR GTTCTG - Intronic HSD17B12 (s) -
39 12p13.1 chr12:12810288-12810845 (-) LTR ATCTA - Intergenic - DDX47
40 12q24.33 chr12:132949015-132949570 (+) LTR GTATC - Intronic ZNF605 (as) -
41 13q13.3 chr13:37090225-37090778 (+) LTR CCTGTT - Intergenic - -
42 14q31.1 chr14:79706443-79707024 (+) LTR TTGGTC - Intronic NRXN3 (s) -
43 16p13.13 chr16:10785748-10785943 (+) LTRb not found - Intronic FAM18A (as) -
44 16p13.13 chr16:10788495-10789043 (-) LTR GAGAYC - Intronic FAM18A (s) -
45 17p13.1 chr17:8056835-8057031 (+) LTRb not found - Intergenic - ALOX15B
46 17p13.1 chr17:8082291-8082848 (+) LTR CCAGG - Intronic ALOX12B (as) MIR4314
47 17q11.2 chr17:32913177-32913734 (+) LTR GGTATR - Intergenic - -
48 19p13.3 chr19:2863773-2863865 (+) LTRb not found - Intergenic - ZNF555; ZNF556
49 19p13.2 chr19:7100429-7100974 (-) LTR GTCTC - Intergenic - -
50 19p12 chr19:21987441-21988020 (+) LTR ATAAYA - Intronic ZNF208 (as) -
51 19p12 chr19:23876577-23877146 (-) LTR CTCCCC - Intergenic - -
52 19q13.11 chr19:34595165-34595718 (-) LTR TGTAGG - Intergenic - SCGBL
53 19q13.12 chr19:36636542-36637090 (-) LTR not found - Intergenic - ZNF382; ZNF461
54 19q13.2 chr19:42667555-42668111 (-) LTR GTGTG - Intergenic - -
55 19q13.31 chr19:44283216-44283766 (-) LTR GTAAG - Intergenic - ZNF233; ZNF235
56 19q13.32 chr19:46030891-46031467 (+) LTR CAAGGT - Intergenic - IGFL4; PGLYRP1
57 19q13.41 chr19:51900477-51900716 (-) LTRb not found - Intronic ZNF649 (s); ZNF619 (as) ZNF649-AS1
58 19q13.41 chr19:52460866-52466497 (-) Provirusb AAAAC - Intronic ZNF578 (as) ZNF534
59 21q22.3 chr21:43698519-43699073 (+) LTR TTTAG - Intergenic - RRP1B
60 21q22.3 chr21:43738447-43739417 (+) LTR CTAAT AluSx; AluY Intronic PDXK (as) -
61 22q11.21 chr22:20818927-20819480 (-) LTR TAAGA - Intronic PI4KA (s) -
62 22q13.31 chr22:45188740-45189285 (+) LTR TGCAAC - Intergenic - NUP50; KIAA0930
63 Xp11.23 chrX:48047190-48047228 (-) LTRb not found - Intergenic - ZNF630-AS1
64 Xp11.22 chrX:51636506-51637062 (+) LTR GCTCTA - Intergenic - -
65 Xq22.2 chrX:103469871-103470407 (-) LTR GRGGAG - Intergenic -- --
66 Xq22.3 chrX:107232277-107232369 (-) LTRb not found - Intronic PIH1D3 (as) -
67 Xq27.1 chrX:139517757-139518302 (+) LTR CTTAAG - Intergenic - -
68 Yq11.221 chrY:12993871-13001093 (-) Provirus TGSATT AluY; LTR2B Intergenic - -
69 Yq11.221 chrY:13333756-13334302 (+) LTR CRYAGC - Intronic UTY (as) -
70 Yq11.221 chrY:16492757-16493302 (+) LTR TCCAAR - Intergenic - -
  1. Chromosome bands and coordinates are according to the hg38 assembly [1] and RepeatMasker annotation [70]
  2. As, antisense orientation; s, sense orientation; TSD, target site duplication; adenotes a tandemly repeated LTR; bdenotes truncated elements.
  3. Ambiguous nucleotides are indicated as follows: K, G or T; M, A or C; S, C or G; R, A or G; W, A or T; Y, C or T