From: Somatic retrotransposition is infrequent in glioblastomas
Sample ID | Chromosome | 5′ junction coordinate | 3′ junction coordinate | L1 strand | Length of inserted L1 | Length of TSD | Gene name | CN | LOH |
---|---|---|---|---|---|---|---|---|---|
Blood specific insertions | |||||||||
750 | 5 | . | 34495746 | + | . | . | . | 1 | Y |
750 | 13 | 50488000 | 50487984 | + | 4162 bp | 17 bp | GUCY1B2 | 1 | Y |
772 | 14 | 33209876 | 33209888 | - | 5422 bp | 13 bp | NPAS3 | 1 | Y |
832 | 10 | 31557469 | 31557476 | - | 6059 bp | 8 bp | . | 1 | Y |
847 | 11 | 33626714 | 33626699 | + | 1281 bp | 16 bp | KIAA1549L | 1 | Y |
847 | 11 | . | 94317493 | - | . | . | . | 1 | Y |
897 | 8 | 24982467 | 24982461 | - | 2845 bp | 7 bp | . | 2 | Y |
897 | 8 | 119790870 | 119790884 | - | 965 bp | 15 bp | SAMD12AS1 | 2 | Y |
897 | 13 | 85238154 | 85238150 | - | 684 bp | 5 bp | . | 1 | Y |
897 | 14 | . | 30220577 | - | . | . | SCFD1 | 2 | Y |
922 | 11 | 33626714 | 33626699 | + | 1281 bp | 16 bp | KIAA1549L | 1 | Y |
Tumor specific insertions | |||||||||
083 | 17 | 47881841 | 47881832 | + | 1839 bp | 10 bp | . | NT | NT |