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Table 2 PCR validated L1 insertions

From: Somatic retrotransposition is infrequent in glioblastomas

Sample ID Chromosome 5′ junction coordinate 3′ junction coordinate L1 strand Length of inserted L1 Length of TSD Gene name CN LOH
Blood specific insertions
750 5 . 34495746 + . . . 1 Y
750 13 50488000 50487984 + 4162 bp 17 bp GUCY1B2 1 Y
772 14 33209876 33209888 - 5422 bp 13 bp NPAS3 1 Y
832 10 31557469 31557476 - 6059 bp 8 bp . 1 Y
847 11 33626714 33626699 + 1281 bp 16 bp KIAA1549L 1 Y
847 11 . 94317493 - . . . 1 Y
897 8 24982467 24982461 - 2845 bp 7 bp . 2 Y
897 8 119790870 119790884 - 965 bp 15 bp SAMD12AS1 2 Y
897 13 85238154 85238150 - 684 bp 5 bp . 1 Y
897 14 . 30220577 - . . SCFD1 2 Y
922 11 33626714 33626699 + 1281 bp 16 bp KIAA1549L 1 Y
Tumor specific insertions
083 17 47881841 47881832 + 1839 bp 10 bp . NT NT
  1. List of L1 insertions validated by PCR in glioblastoma patients’ samples
  2. TSD target site duplication, CN copy number, LOH loss of heterozygosity, NT not tested