Table 2 Abundance of DNA transposons in teleost genomes
From: The contribution of transposable elements to size variations between four teleost genomes
Type/superfamily/family | TE coverage (copy number/base pairs masked/%) | |||
|---|---|---|---|---|
Zebrafish | Medaka | Stickleback | Tetraodon | |
Cut and paste TE | Â | Â | Â | Â |
 Academ | 987/87534/0.01 | 791/145168/0.02 | 334/48465/0.01 |  |
 CMC-Chapaev-3 |  | 42/21183/0.00 |  |  |
 CMC-EnSpm | 382820/64375022/4.69 | 162/35330/0.00 | 5353/1984708/0.43 | 1524/119135/0.03 |
 Crypton | 36092/4088708/0.30 | 8275/1835625/0.21 |  |  |
 Dada | 17226/2082682/0.15 | 549/121682/0.01 | 118/44503/0.01 | 936/109835/0.03 |
 Ginger | 6053/551259/0.04 | 236/55011/0.01 |  |  |
 IS3EU | 17838/2815133/0.21 |  |  |  |
 Kolobok | 128817/33082060/2.41 | 14/2093/0.00 | 583/74420/0.02 |  |
 Merlin | 76084/8473015/0.62 |  | 710/437407/0.09 |  |
 MULE-MuDR | 4276/2180335/0.16 | 206/46981/0.01 | 70/16079/0.00 |  |
 MULE-NOF | 1159/272049/0.02 |  |  |  |
 P | 7170/1900925/0.14 |  |  |  |
 PIF-Harbinger | 110931/43436661/3.17 | 32217/11657322/1.34 | 3030/1513874/0.33 | 539/106002/0.03 |
 PIF-ISL2EU | 2262/959233/0.07 | 216/157939/0.02 | 365/213849/0.05 |  |
 PiggyBac | 45457/17290031/1.26 | 34982/6161692/0.71 | 890/125960/0.03 | 359/119750/0.03 |
 Sola | 15251/3243347/0.24 | 1245/325083/0.04 | 419/220972/0.05 |  |
 Zisupton | 6559/1093949/0.08 |  |  |  |
Tc1/Mariner (total) | 192070/64157597/4.68 | 65677/20436282/2.35 | 9784/3576109/0.78 | 1401857/0.39 |
 Tc1 | 122464/47220045/3.44 | 37350/13303937/1.53 | 6236/2542455/0.55 | 1578/513677/0.14 |
 pogo | 5844/1778814/0.13 | 27376/6703781/0.77 | 2439/635035/0.14 | 2781/832008/0.23 |
 Other families | 4632/1895302/0.14 | 951/428564/0.05 | 1109/398619/0.09 | 200/56172/0.02 |
 Unclassified Tc1/Mariner | 59130/13263436/0.97 |  |  |  |
hAT (total) | 708715/160965573/11.73 | 116937/31365783/3.61 | 43229/9730722/2.11 | 12659/2713799/0.75 |
 Ac | 222707/57824458/4.22 | 29754/7436916/0.86 | 23961/3811137/0.83 | 1243/339847/0.09 |
 Charlie | 133312/26390661/1.92 | 72169/20423089/2.35 | 11098/4133497/0.90 | 7615/1794070/0.50 |
 Other families | 97917/19890417/1.45 | 7404/1871492/0.22 | 3074/511394/0.11 | 1211/362560/0.10 |
 Unclassified hAT | 254779/56860037/4.15 | 7610/1634286/0.19 | 5096/1274694/0.28 | 2590/217322/0.06 |
Self-synthesizing TE | Â | Â | Â | Â |
 Maverick | 11019/1934799/0.14 |  | 538/558181/0.12 | 1243/101677/0.03 |
Rolling-circle TE | Â | Â | Â | Â |
 Helitron | 105567/19541897/1.42 | 3043/304374/0.04 | 1564/204360/0.04 | 187/50445/0.01 |