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Table 1 TE coverage in teleost genomesa

From: The contribution of transposable elements to size variations between four teleost genomes

 

Zebrafish

Medaka

Stickleback

Tetraodon

Count

(%/Mb)

Count

(%/Mb)

Count

(%/Mb)

Count

(%/Mb)

Total retrotransposons

533112

12.00/164.29

215153

8.37/58.71

105276

6.61/29.50

35607

4.00/12.08

SINE

136879

2.24/30.64

30578

0.68/4.79

11523

0.67/2.97

1498

0.09/0.26

LINE

132888

3.85/52.78

112487

4.97/34.86

35604

2.60/11.61

19385

1.97/5.94

LTR

160149

5.90/80.87

72088

2.72/19.05

58159

3.34/14.92

14724

1.95/5.89

DNA

2368307

41.07/562.49

282359

11.00/77.14

73571

4.47/19.96

21901

1.55/4.68

Unclassified

228249

3.43/46.92

397468

14.32/100.42

72717

3.14/14.02

18465

1.58/4.78

Total interspersed repeats

 

56.49/773.70

 

33.70/236.28

 

14.21/63.48

 

7.13/21.55

Small RNA

13817

0.12/1.65

7223

0.16/1.09

2950

0.10/0.45

784

0.04/0.13

Satellite

75515

1.50/20.61

3046

0.16/1.13

1309

0.09/0.41

560

0.08/0.23

Simple repeats

42321

0.99/13.50

15283

0.29/2.03

8876

0.25/1.12

22873

0.74/2.25

Low complexity

1128

0.03/0.35

149

0.00/0.03

243

0.01/0.04

300

0.02/0.05

  1. aThe custom library combined with the repeats from RepBase (version 20150807) and de novo repeats was used for the all investigated teleost genomes