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Table 1 TE coverage in teleost genomesa

From: The contribution of transposable elements to size variations between four teleost genomes

  Zebrafish Medaka Stickleback Tetraodon
Count (%/Mb) Count (%/Mb) Count (%/Mb) Count (%/Mb)
Total retrotransposons 533112 12.00/164.29 215153 8.37/58.71 105276 6.61/29.50 35607 4.00/12.08
SINE 136879 2.24/30.64 30578 0.68/4.79 11523 0.67/2.97 1498 0.09/0.26
LINE 132888 3.85/52.78 112487 4.97/34.86 35604 2.60/11.61 19385 1.97/5.94
LTR 160149 5.90/80.87 72088 2.72/19.05 58159 3.34/14.92 14724 1.95/5.89
DNA 2368307 41.07/562.49 282359 11.00/77.14 73571 4.47/19.96 21901 1.55/4.68
Unclassified 228249 3.43/46.92 397468 14.32/100.42 72717 3.14/14.02 18465 1.58/4.78
Total interspersed repeats   56.49/773.70   33.70/236.28   14.21/63.48   7.13/21.55
Small RNA 13817 0.12/1.65 7223 0.16/1.09 2950 0.10/0.45 784 0.04/0.13
Satellite 75515 1.50/20.61 3046 0.16/1.13 1309 0.09/0.41 560 0.08/0.23
Simple repeats 42321 0.99/13.50 15283 0.29/2.03 8876 0.25/1.12 22873 0.74/2.25
Low complexity 1128 0.03/0.35 149 0.00/0.03 243 0.01/0.04 300 0.02/0.05
  1. aThe custom library combined with the repeats from RepBase (version 20150807) and de novo repeats was used for the all investigated teleost genomes