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Table 1 Position of Tj1 integration in S. pombe

From: A long terminal repeat retrotransposon of Schizosaccharomyces japonicus integrates upstream of RNA pol III transcribed genes

Type

Gene Name

No. of inserts

Distance from sequence of mature RNA

Distance from transcription initiation site of RNAa

Orientation

tRNA

SPATRNAVAL.01

1

−11

−8

Forward

tRNA

SPATRNACYS.02

1

−11

−10

Forward

Gene

SPAC12B10.11b

1

1018

NA

Reverse

tRNA

SPBTRNAGLY.03

1

−10

−5

Forward

5S rRNA

SPRRNA.27

1

41

NA

Forward

tRNA

SPBTRNAASN.02

1

−11

−9

Forward

tRNA

SPBTRNAGLY.09

1

−10

−7

Forward

tRNA

SPBTRNAGLU.08

1

−11

−5

Forward

tRNA

SPCTRNAPHE.04

3

−5, −6, −7

−1, −2, −3

Forward

tRNA

SPCTRNAGLY.11

1

−6

−4

Forward

5S rRNA

SPRRNA.26

1

30

NA

Forward

tRNA

SPCTRNAASN.05

2

−11, 10

−1, −2

Forward

5S rRNA

SPRRNA.06

1

−3

NA

Forward

tRNA

SPCTRNAGLY.12

1

−9

−5

Forward

  1. aInitiation sites were predicted based on location of TATA boxes
  2. bRNA pol II transcribed gene