Table 1 Target site characteristics of DNA transposon superfamilies
From: Genome-wide comparison of Asian and African rice reveals high recent activity of DNA transposons
TE superfamily | Target site motif | Target site size | TIR consensus |
|---|---|---|---|
Mariner (DTT) | TA | 2 | CTCCCTC |
Harbinger DTH) | TAA/TTA | 3 | GG(G/C)CC |
Mutator (DTM) | Variable | 9 | GAG |
CACTA (DTC) | Variable | 3 | CACT(A/G) |
hAT (DTA) | Variable | 8 | CA |