Skip to main content

Table 1 Repeat composition of Orobanche species

From: Transposable elements in a clade of three tetraploids and a diploid relative, focusing on Gypsy amplification

  454 Illumina
Ocum Ocre Opan Ogra Ogra (IND) Ogra (CD) Oden (CD) Oaus (CD) Orap (CD) Orap (IND)
Gypsy 17.02 21.44 24.16 28.34 23.64 27.62 36.25 39.64 30.47 27.62
Copia 16.01 21.42 18.82 18.41 21.63 20.52 22.00 20.15 16.06 13.89
Unclassified LTRs - 0.13 0.69 1.71 2.46 0.30 0.19 0.14 0.25 1.64
LINE/SINE 0.41 0.56 1.04 0.47 0.54 0.64 0.54 0.76 0.57 0.82
Unclassified RNA TEs - - - - - 0.04 0.02 0.09 0.43 0.06
En-Spm 0.55 0.74 1.04 0.65 0.77 0.84 0.81 0.57 1.23 1.30
hAT 0.06 0.12 0.24 0.11 1.40 0.33 0.09 0.12 0.27 0.53
Mutator 0.11 0.11 0.28 0.23 0.49 0.18 0.20 0.23 0.24 0.57
RC/Helitron 0.06 0.22 0.12 - - 0.25 0.16 0.09 0.18 -
PIF-Harbinger - - 0.01 0.04 - - - - - -
Tc1-Mariner - - - 0.03 0.05 - - - - -
Unclassified DNA TEs - - - - 0.21 0.48 0.63 0.42 0.17 -
rDNA 0.67 1.74 1.34 1.36 1.51 0.59 2.03 1.17 1.28 1.59
Satellites 3.1 3.88 2.28 5.08 14.41 13.45 11.23 12.92 2.59 9.40
Group II introns - - - - 0.09 - - - - -
Unclassified repeats 7.57 4.57 6.06 3.71 1.48 2.12 2.45 2.23 1.70 0.26
Total 45.57 54.94 56.09 60.13 68.68 67.34 76.59 78.53 55.42 57.69
  1. Values in italics are reported from [11]. LINE, long interspersed nuclear element; LTR, long terminal repeat; SINE, short interspersed element; TE, transposable element.