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Table 1 Repeat composition of Orobanche species

From: Transposable elements in a clade of three tetraploids and a diploid relative, focusing on Gypsy amplification

 

454

Illumina

Ocum

Ocre

Opan

Ogra

Ogra (IND)

Ogra (CD)

Oden (CD)

Oaus (CD)

Orap (CD)

Orap (IND)

Gypsy

17.02

21.44

24.16

28.34

23.64

27.62

36.25

39.64

30.47

27.62

Copia

16.01

21.42

18.82

18.41

21.63

20.52

22.00

20.15

16.06

13.89

Unclassified LTRs

-

0.13

0.69

1.71

2.46

0.30

0.19

0.14

0.25

1.64

LINE/SINE

0.41

0.56

1.04

0.47

0.54

0.64

0.54

0.76

0.57

0.82

Unclassified RNA TEs

-

-

-

-

-

0.04

0.02

0.09

0.43

0.06

En-Spm

0.55

0.74

1.04

0.65

0.77

0.84

0.81

0.57

1.23

1.30

hAT

0.06

0.12

0.24

0.11

1.40

0.33

0.09

0.12

0.27

0.53

Mutator

0.11

0.11

0.28

0.23

0.49

0.18

0.20

0.23

0.24

0.57

RC/Helitron

0.06

0.22

0.12

-

-

0.25

0.16

0.09

0.18

-

PIF-Harbinger

-

-

0.01

0.04

-

-

-

-

-

-

Tc1-Mariner

-

-

-

0.03

0.05

-

-

-

-

-

Unclassified DNA TEs

-

-

-

-

0.21

0.48

0.63

0.42

0.17

-

rDNA

0.67

1.74

1.34

1.36

1.51

0.59

2.03

1.17

1.28

1.59

Satellites

3.1

3.88

2.28

5.08

14.41

13.45

11.23

12.92

2.59

9.40

Group II introns

-

-

-

-

0.09

-

-

-

-

-

Unclassified repeats

7.57

4.57

6.06

3.71

1.48

2.12

2.45

2.23

1.70

0.26

Total

45.57

54.94

56.09

60.13

68.68

67.34

76.59

78.53

55.42

57.69

  1. Values in italics are reported from [11]. LINE, long interspersed nuclear element; LTR, long terminal repeat; SINE, short interspersed element; TE, transposable element.