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Table 1 Primers and probes used in this study

From: A droplet digital PCR detection method for rare L1 insertions in tumors

Primer/Probe Name

Sequence

5’ L1Hs Primer

5’ GGAAATGCAGAAATCACCGTCTTC 3’

5’ L1Hs Probe (Chr 15)

5’ FAM AGGAACAGCTCCGGTCTACAGCTC BHQ1 3’

5’ L1Hs Probe (other loci tested)

5’ FAM AGGAACAGC/ZEN/TCCGGTCTACAGCTC IABkFQ 3’

5’ Chr15 AC216176 Locus Primer

5’ GTGGACAAAGAAAAGCATCCTTGAT 3’

RPP30 Forward Primer

5’ GATTTGGACCTGCGAGCG 3’

RPP30 Reverse Primer

5’ GCGGCTGTCTCCACAAGT 3’

RPP30 Probe

5’ VIC CTGACCTGAAGGCTCT MGB 3’

5’ Chr4 esv3475 Locus Primer

5’ CCACATGGTATAAGATAAAAACACGAG 3’

5’ Chr4 esv4912 Locus Primer

5’ CTAAGCAATGGAGGAAAATATCG 3’

3’ L1Hs Primer

5’ GGGAGATATACCTAATGCTAGATGACAC 3’

3’ L1Hs Probe

5’ FAM ATTATACTCTAAGTTTTAGGGTACATGTGCACATTGTGC BHQ1 3’

3’ Chr15 AC216176 Locus Primer

5’ TCTATAAGCAGTGGAAGCACATG 3’

3’ Chr4 esv3475 Locus Primer

5’ GACCAATTTTTTTTTGCCTGTACTGAC 3’

3’ Chr4 esv4912 Locus Primer

5’ TGCATTTTGAGTTAATTTTTGTACATGGTG 3’