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Table 1 Plant Tc1-like transposases described in this study

From: Tc 1-like transposable elements in plant genomes

Element

Organism

Accession

ORF start

ORF end

Complete DD34E triad?

Plant

    

Y: yes; N, no

PpTc1

Physcomitrella patens

ABEU01007491

7,186

8,199

Y

PpTc2

Physcomitrella patens

ABEU01006878

162,826

161,813

Y

OsTc1

Oryza sativa Indica

AAAA02041396

3,821

2,697

Y

BnTc1

Betula nana

CAOK01056615

1,484

1,978

N

BnTc2

Betula nana

CAOK01550459

168

1,214

Y

BnTc3

Betula nana

CAOK01014729

14,272

14,472

N

BnTc4

Betula nana

CAOK01486111

2

244

N

BrTc1

Brassica rapa

AENI01020305

162

572

N

BrTc2

Brassica rapa

AENI01036930

17

328

N

CsTc1

Cannabis sativa

AGQN01308320

302

517

N

HvTc1

Hordium valgare

CAJV010227559

1

1,684

Y

HvTc2

Hordium valgare

CAJV010272453

49

555

Y

HvTc3

Hordium valgare

CAJV012609061

1,716

2,114

N

HvTc4

Hordium valgare

CAJV011622646

1

222

N

LsTc1

Lactuta sativa

AFSA01593962

2

394

N

LsTc2

Lactuta sativa

AFSA01593962

87

485

N

PtTc1

Populus trichocarpa

AARH01030986

1

714

Y

PxbTc1

Pyrus x bretschneideri

AJSU01007483

3,055

3,606

Y

PxbTc2

Pyrus x bretschneideri

AJSU01007483

3,055

3,606

N

TuTc1

Triticum urartu

AOTI010070343

376

1,368

Y

  1. All TLE elements bear the D34E of the DD34E catalytic motif.