Skip to main content

Table 1 Copy number per chromosome for each category of TEs in D. melanogaster

From: “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

Chromatin type Chromosome Without --strict option With --strict option
   DNA Non-LTR LTR Total DNA Non-LTR LTR Total
Euchromatin 2L 914 263 498 1,675 589 204 278 1,071
2R 1,018 343 707 2,068 649 246 357 1,252
3L 892 369 771 2,032 595 289 393 1,277
3R 549 125 455 1,129 289 91 247 627
4 626 77 35 738 431 54 21 506
X 720 187 585 1,492 454 137 332 923
Total 4,719 1,364 3,051 9,134 3,007 1,021 1,628 5,656
Heterochromatin 2LHet 46 23 88 157 38 21 65 124
2RHet 462 441 811 1,714 370 372 424 1,166
3LHet 463 339 708 1,510 366 274 357 997
3RHet 363 319 683 1,365 282 276 375 933
XHet 65 54 21 140 43 37 14 94
YHet 46 45 89 180 37 41 59 137
Total 1,445 1,221 2,400 5,066 1,136 1,021 1,294 3,451
Unplaced U 909 1,589 3,365 5,863 777 1,399 2,334 4,510
Uextra 2,132 8,253 11,827 22,212 1,866 7,668 9,635 19,169
Total 3,041 9,842 15,192 28,075 2,643 9,067 11,969 23,679
Total   9,205 12,427 20,643 42,275 6,786 11,109 14,891 32,786
Total (without unplaced)   6,164 2,585 5,451 14,200 4,143 2,042 2,922 9,107
  1. LTR, long terminal repeat; TE, transposable element.