Table 2 Primers for amplification of specific chromoviral domains, LTR sequences and integration sites
Amplified domain | Probe number | Forward primer | Reverse primer | Length (bp) |
|---|---|---|---|---|
Beetle 7 LTR | 1 | TAACTAGCTCGGTTTGTCC | CACTCCCCTAAGTCTTTCC | 296 |
Beetle 3 RT | 2 | AGGGGATGAATGGAAGACG | GAAACTAATCTCTCCTTGC | 289 |
Bongo 3 LTR | 3 | ATTTGCTTGTATGCTACATG | TTATTGTCCAACTCTAGACG | 467 |
Bongo 3 RT | 4 | AAGAACAAGTACCCTTTGCC | GAGAACTTGGCATATAATTG | 368 |
Bingo 1 LTR | 5 | AAGGGCAACGGTCACTGGC | TTACAAGATAGGTTCAAGGC | 246 |
Bingo 1 RT | 6 | CGAAGATGCTCACAAAACGGC | GCACTATACACAAGAATATCG | 177 |
Beon 1 LTR | 7 | CACAAACATGAGATGGTGC | CGGACTACTAGACAAGGC | 373 |
Beon 1 RT | 8 | ATGAATAAAATCTTCCAGCC | CCTAAGAAAGACACCTCG | 191 |