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Table 1 Chromoviruses of Beta vulgaris

From: Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration

Clade

Name

Total length, bp

LTR length 5′/3′, bp

TSD, bp

LTR divergence,%

Age, mya

RefBeet contig

CRM

Beetle 3 a

5917

744/742

GTA(T/A)A

2.47

0.82

402713

 

Beetle 3-1

5908

753/753

AGGAG

3.68

1.225

669577

 

Beetle 4 a

6175

886/889

TAATA

4.07

1.35

412171

 

Beetle 4-1

6182

886/890

TAATA

4.06

1.35

554084

 

Beetle 4-2

6169

885/885

CAACA

1.25

0.42

319766

 

Beetle 5 a

6654

1339b/679

AAC(G/T)A

1.79

0.6

483491

 

Beetle 5-1

5941

659/637

TATCA

2.88

0.96

400864

 

Beetle 5-2

5961

679/675

CAATA

3.96

1.32

22920

 

Beetle 6 a

5315

624/422c

TCAGG

(2.91)

(0.9)

636287

 

Beetle 7 a

6695

1086/1086

ACAA(C/A)

2.62

0.87

51293d

Tekay

Bongo 1 a

10329

2669/3000b

AAAAT

5.23

1.75

548721

 

Bongo 2 a

8417

1049c/2743

TAGTA

(3.84)

(1.29)

02834

 

Bongo 3 a

11565

2561/2561

GAGCG

0.08

0.026

EF101866e

Reina

Bingo 1 a

5811

431/430

TAAAT

0.23

0.08

262052

 

Bingo 1-1

5810

425/423

GATTG

1.68

0.6

382156

 

Bingo 2 a

5563

503/500

CTAAC

1.01

0.34

626667

 

Bingo 3 a

5807

453/453

GTAAG

0.67

0.22

596930

 

Bingo 4 a

5452

392/392

TGATG

0.77

0.026

429428

 

Bingo 5 a

5320

343/337

ACCAC

1.80

0.6

111648

 

Bingo 6 a

5261

293/293

CGCAA

1.03

0.345

627491

 

Bingo 7 a

5476

494/494

GGGTT

1.64

0.546

343138

Galadriel

Beon 1 a

6038

631/631

GTAGG

0

Identical LTRs

19150d

  1. aChromoviral family.
  2. bContains insertion.
  3. cContains deletion.
  4. dRefBeet 0.4.
  5. eAccession number of a complete sequenced B. vulgaris bacterial artificial chromosome (BAC).