Skip to main content

Table 1 Chromoviruses of Beta vulgaris

From: Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration

Clade Name Total length, bp LTR length 5/3, bp TSD, bp LTR divergence,% Age, mya RefBeet contig
CRM Beetle 3 a 5917 744/742 GTA(T/A)A 2.47 0.82 402713
  Beetle 3-1 5908 753/753 AGGAG 3.68 1.225 669577
  Beetle 4 a 6175 886/889 TAATA 4.07 1.35 412171
  Beetle 4-1 6182 886/890 TAATA 4.06 1.35 554084
  Beetle 4-2 6169 885/885 CAACA 1.25 0.42 319766
  Beetle 5 a 6654 1339b/679 AAC(G/T)A 1.79 0.6 483491
  Beetle 5-1 5941 659/637 TATCA 2.88 0.96 400864
  Beetle 5-2 5961 679/675 CAATA 3.96 1.32 22920
  Beetle 6 a 5315 624/422c TCAGG (2.91) (0.9) 636287
  Beetle 7 a 6695 1086/1086 ACAA(C/A) 2.62 0.87 51293d
Tekay Bongo 1 a 10329 2669/3000b AAAAT 5.23 1.75 548721
  Bongo 2 a 8417 1049c/2743 TAGTA (3.84) (1.29) 02834
  Bongo 3 a 11565 2561/2561 GAGCG 0.08 0.026 EF101866e
Reina Bingo 1 a 5811 431/430 TAAAT 0.23 0.08 262052
  Bingo 1-1 5810 425/423 GATTG 1.68 0.6 382156
  Bingo 2 a 5563 503/500 CTAAC 1.01 0.34 626667
  Bingo 3 a 5807 453/453 GTAAG 0.67 0.22 596930
  Bingo 4 a 5452 392/392 TGATG 0.77 0.026 429428
  Bingo 5 a 5320 343/337 ACCAC 1.80 0.6 111648
  Bingo 6 a 5261 293/293 CGCAA 1.03 0.345 627491
  Bingo 7 a 5476 494/494 GGGTT 1.64 0.546 343138
Galadriel Beon 1 a 6038 631/631 GTAGG 0 Identical LTRs 19150d
  1. aChromoviral family.
  2. bContains insertion.
  3. cContains deletion.
  4. dRefBeet 0.4.
  5. eAccession number of a complete sequenced B. vulgaris bacterial artificial chromosome (BAC).