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Table 2 Recombination events in which groups of sequences (see text for more explanation) are involved according to maximum χ 2 and GARD dendrogram analyses

From: Evolution of a transposon in Daphnia hybrid genomes

Sequences

Events involving sequences according to the maximum χ2test (other sequences involveda)

Pairs of probable parental sequences estimated using GARD dendrograms based on two different recombination breakpointsb

a

I (h, g, c, PX2-QC-8_29), IV (b, EPC2-SP-2_1), V (h), VII (g)

h : c or i : c

TE3-MB-4_9

I (i), VII (g, PX2-SF-8_29, PX2-SF-8_1, f)

h : c or i : c and c : h

b

II (i), IV (a)

d : a or EPC2-SP-2_1 : a or EPC2-DE-3_1 : a

d : c or EPC2-SP-2_1 : c or EPC2-DE-3_1 : c

d : i or EPC2-SP-2_1 : i or EPC2-DE-3_1 : i

EPC2-SP-2_1

II (i), IV (a, h)

b : i, b : c or b : a

EPC2-DE-3_1

-

b : i, b : c or b : a

c

I (a), IV (i), V (h), VI (g)

d : i

d

-

-

e

-

-

f

VII (TE3-MB-4_9)

-

PX2-QC-8_29

I (a), VII (TE3-MB-4_9)

i : f or h : f

PX2-QC-8_1

VII (TE3-MB-4_9)

g : f

g

I (a), VI (c), VII (a, TE3-MB-4_9)

unknown : f

PX3-QC-1_20

III (i)

g : h or g : i and i : g or h : g

h

IV (EPC2-SP-2_1), V (a, c)

i : Unknown or a : Unknown

i

I (TE3-MB-4_9), II (b, EPC2-SP-2_1), III (PX3-QC-1_20), IV (c)

h : Unknown

  1. aMultiple sequences between parentheses highlight probable parental sequences for the same recombination event; bThe first sequence in each pair corresponds to the sequence before the estimated recombination breakpoint. GARD, Genetic Algorithm for Recombination Detection.