Table 3 Integrase recognition motifs
From: Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)
Name | 5′ INT motif | 3′ INT motif |
|---|---|---|
Zam | AGTTAYRK | TAAYT |
Mag C | TGTNATRT | AYANAACA |
Mag A | TGTTRKR | RMRWMYAYAACA |
CsRN1 | TGTGGYG | MSYYAMA |
Sushi | TGTYANR | CNTNACA |
rGmr1 | TGTNANR | CGTNACA |
Sire | TGTTRRN(3)TAA | TT(20)CYAACA |
Retrofit | TGTTARAMNAT(1)AT | ATT(1)TTYA(1)CA |
HML | TGTNGGGRAARG | CCCNRCA |
Gamma | TGWAGNMRR | NNYNACA |
Class III endogenous retroviruses | TGT | ACA |