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Table 1 Description of models

From: Conserved structure and inferred evolutionary history of long terminal repeats (LTRs)

Name Taxon Host Number in training set Train_length M Score_test
Zam Gypsy/Ty3 Insects 8 318 150 33
Mag C Gypsy/Ty3 Metazoans 16 174 50 21
Mag A Gypsy/Ty3 Mosquito 20 213 90 41
CsRN1 Gypsy/Ty3 Metazoans 13 330 90 27
Sushi Gypsy/Ty3 Fungi/Metazoans 24 572 150 46
rGmr1 Gypsy/Ty3 Fish 34 695 150 42
Sire Copia/Ty1 Plants 68 373 150 49
Retrofit Copia/Ty1 Plants 32 220 150 74
HML Retroviruses Primates 23 390 150 81a
Gamma Retroviruses Vertebrates 72 521 150 50a
Class III endogenous retroviruses Retroviruses Vertebrates 70 504 150 51
  1. Name, taxonomic group, host, number of training sequences, average length of training sequences, chosen number of match states M and score of test set are given for each HMM model. The constituents of the training sets are shown in Additional file 1.
  2. aNo test set; score of training set is shown.