From: Revisiting the evolution of mouse LINE-1 in the genomic era
Familya | Repeat masker classification | Promoter type | LPR structure | Genomic copy numberb | Number of FL elements | Average pairwise divergence (% ± S.E.)c | Age (Myr)d |
---|---|---|---|---|---|---|---|
L1MdA_I | L1MdA | A | 66-42 | 4,249 | 1,620 | 0.376 ± 0.073 | 0.21 (0.17-0.25) |
L1MdA_ II | L1MdA | A | 66-42-42 | 5,156 | 1,240 | 2.939 ± 0.294 | 1.62 (1.45-1.78) |
L1MdA_ III | L1MdA | A | 66-42-42 | 4,337 | 606 | 3.916 ± 0.304 | 2.15 (1.99-2.32) |
L1MdA_IV | L1MdF2 | A | 66-42-42 | 1,209 | 645 | 4.346 ± 0.414 | 2.39 (2.16-2.62) |
L1MdA_V | L1MdF3 | A | 66-42-42 | 945 | 299 | 5.167 ± 0.341 | 2.84 (2.65-3.03) |
L1MdA_VI | L1MdF3 | A | 66-66 | 5,497 | 219 | 8.554 ± 0.434 | 4.70 (4.47-4.94) |
L1MdA_VII | L1MdF2 | A | 66-66 | 5,684 | 759 | 8.346 ± 0.414 | 4.59 (4.36-4.82) |
Tf_I | L1Md_T | F | 66-42-42 | 5,601 | 1,593 | 0.462 ± 0.095 | 0.25 (0.20-0.31) |
Tf_II | L1Md_T | F | 66-42-42 |  | 1,282 | 0.496 ± 0.087 | 0.27 (0.22-0.32) |
Tf_III | L1Md_T | F | 66-42-42 | 4,678 | 1,892 | 2.233 ± 0.196 | 1.23 (1.12-1.34) |
Gf_I | L1Md_F, L1Md_T | F | 66-42-42-42 | 2,177 | 615 | 1.356 ± 0.250 | 0.75 (0.61-0.88) |
Gf_II | L1Md_T | F | 66-66-66 | 770 | 368 | 3.929 ± 0.421 | 2.16 (1.93-2.39) |
L1MdF_I | L1MdF2 | F | 66-42-42 | 5,112 | 1,209 | 3.853 ± 0.278 | 2.12 (1.97-2.27) |
L1MdF_II | L1MdF2 | F | 66-42-42 |  | 609 | 4.537 ± 0.271 | 2.50 (2.35-2.64) |
L1MdF_III | L1MdF2 | F | 66-66 |  | 548 | 8.040 ± 0.400 | 4.42 (4.20-4.64) |
L1MdF_IV | L1MdF2 | F | 66-42-42 | 6,179 | 964 | 11.627 ± 0.503 | 6.39 (6.12-6.67) |
L1MdF_V | L1VL1, L1MdF2 | F | 66-42 | 3,936 | 884 | 11.683 ± 0.487 | 6.43 (6.16-6.69) |
L1MdFanc_I | L1Md_F, L1_Mus1 | Fanc | 66-42 | 4,398 | 418 | 12.366 ± 0.610 | 6.80 (6.47-7.14) |
L1MdFanc_II | L1_Mus2 | Fanc | 66-66-66 | 16,491 | 460 | 16.795 ± 0.821 | 9.24 (8.79-9.69) |
L1MdN_I | L1VL1, L1Md_F, L1Md_F3 | N | 66-42-42 | 2,237 | 367 | 3.447 ± 0.212 | 1.90 (1.78-2.01) |
L1MdV_I | L1VL1, L1_Mus1 | V | 45-66 | 5,777 | 318 | 15.257 ± 0.647 | 8.39 (8.04-8.75) |
L1MdV_II | L1_Mus3 | V | 66 | 3,848 | 470 | 18.318 ± 0.855 | 10.07 (9.60-10.55) |
L1MdV_III | Lx | V | 66-66 | NA | N/A | 17.575 ± 0.968 | 9.67 (9.13-10.20) |
L1MdMus_I | L1_Mus1 | Mus | 66-66-42-56 | 4,947 | 535 | 12.068 ± 0.590 | 6.64 (6.31-6.96) |
L1MdMus_II | L1_Mus2 | Mus | 66-66 | 1,924 | 304 | 14.971 ± 0.521 | 8.23 (7.95-8.52) |
L1Lx_I | L1_Mus3 | Lx | 66-66 | 1,649 | 384 | 19.864 ± 0.846 | 10.93 (10.46-11.39) |
L1Lx_II | L1_Mus4 | Lx | 66-66 | 3,546 | 186 | 23.907 ± 0.998 | 13.15 (12.60-13.70) |
L1Lx_III | L1_Mus4 | Lx | 66-66 | 3,667 | 193 | 18.595 ± 0.841 | 10.23 (9.76-10.69) |
L1Lx_IV | Lx | Lx | 66-66 | NA | N/A | 25.642 ± 1.237 | 14.10 (13.42-14.78) |