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Table 3 Counts of intact open reading frames for full length consensus sequences of each element class

From: Transposable element evolution in Heliconius suggests genome diversity within Lepidoptera

Class

Element name

Coordinates of ORF

# Intact

DNA Transposon

Tc3-1_Hm

120 - 1208

43

NonLTR

Jockey-1_Hm

2980 - 4896

3

 

Jockey-3_Hm

2051 - 4969

2

 

L2-1_Hm

534 - 2924

1

 

L2-7_Hm

95 - 1828

1

 

L2-9_Hm

55 - 1530

3

 

L2-13_Hm

543 - 2975

1

 

L2-14_Hm

1468 - 4407

1

 

L2-15_Hm

505 - 1986

1

 

Proto2-3_Hm

111 - 1280

1

 

R1-2_Hm

1411 - 4557

2

 

R4-2_Hm

119 - 4207

1

 

RTE-1_Hme

616 - 3636

1

 

RTE-3_Hm

264 - 3233

6

 

RTE-5_Hm

1334 - 3874

2

 

RTE-9_Hm

723 - 1724

2

 

RTE-10_Hm

323 - 1639

1

 

RTE-15_Hm

69 - 1130

1

 

RTE-20_Hm

181 - 3144

3

 

TRAS1_R1_Hm

1299 - 3611

2

 

Zenon-1_Hm

172 - 3333

1

 

Zenon-2_Hm

590 - 3517

2

LTR

Gypsy-1_HMM-I

13 - 4542

1

 

Gypsy-2_HMM-I

1071 - 5060

1

 

Gypsy-3_HMM-I

2741 - 4402

1

 

Gypsy-5_HMM-I

52 - 1716

1

 

Gypsy-5_HMM-I

2601 - 4148

1

 

Gypsy-6_HMM-I

84 - 2540

1

 

Gypsy-6_HMM-I

3008 - 4198

5

 

Gypsy-7_HMM-I

49 - 1272

1

 

Gypsy-7_HMM-I

1694 - 3433

1

 

Gypsy-8_HMM-I

1260 - 3167

1

 

Gypsy-10_HMM-I

1525 - 3489

1

  1. Counts were determined as describe in the text.
  2. Bolded elements indicate the highest count in each category.