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Table 1 Transposable elements and other repeats identified in C. vicina

From: Diversity of transposable elements and repeats in a 600 kb region of the fly Calliphora vicina

  Family Name Copies Total size Average Longest
Class I (retrotransposons) LTR/Gypsy-CsRn1 CsRn1_Cv1 1 4294 4294 4294
LTR/Gypsy-Osvaldo Cv_Isis-like 1 10995 10995 10995
LTR/Pao Pao_Cv1 1 6420 6420 6420
Total LTR 3 3 21709 7236 10995
    3.54%   
LINE/CR1 CR1-1_CV 3 2703 901 1461
LINE/CR1 CR1-2_CV 2 309 155 309
LINE/CR1 CR1-3_CV 1 188 188 188
LINE/Jockey Jockey_Cv1 1 553 553 553
LINE/Jockey Jockey_Cv2 1 180 180 180
LINE/LOA LOA-1_Cv 1 536 536 536
LINE/LOA LOA-2_Cv 1 1636 1636 1636
LINE/LOA LOA-3_Cv 1 157 157 157
LINE/LOA LOA-4_Cv 1 294 294 294
LINE/LOA LOA-5_Cv 1 447 447 447
LINE/LOA LOA-6_Cv 3 2414 805 1157
LINE/LOA LOA-7_Cv 1 472 472 472
LINE/LOA LOA-8_Cv 1 129 129 129
LINE/LOA LOA-9_Cv 1 83 83 83
LINE/LOA LOA-10_Cv 2 890 445 660
LINE/L2 L2-1_Cv 1 315 315 315
LINE/RTE RTE-1_Cv 1 1111 1111 1111
LINE/RTE RTE-2_Cv 1 726 726 726
LINE LINE1_Cv 1 276 276 276
LINE LINE2_Cv 3 2541 847 2125
LINE LINE3_Cv 1 2116 2116 2116
Total LINE 21 29 18076 623 2125
    2.95%   
Class II (DNA transposons) DNA/ITm-mariner Cv-mar1 40 30549 764 1296
DNA/ITm-mariner Cv-mar2 14 6154 440 989
DNA/ITm-mariner Cv-mar3 5 950 190 311
DNA/ITm-mariner Cv-mar5 1 427 427 427
DNA/ITm-DD37E DD37E_Cv1 4 3073 768 1304
DNA/ITm-Tc1 AMARI_Cv1 5 1863 373 657
DNA/ITm-Tc1 SMAR_CV1 1 357 357 357
DNA/ITm-Tc1 CRMAR_CV1 1 305 305 305
DNA/ITm-Tc3 Tc3_CV1 1 356 356 356
DNA/ITm-Tc3 Tc3_CV2 1 414 414 414
DNA/MITE MITE_Cv1 8 1524 191 245
DNA/Chapaev-Chapaev3 Chapaev3-1_CV 2 1658 829 1075
DNA/Chapaev-Chapaev3 Chapaev3-2_CV 1 302 302 302
DNA/hAT hAT_CV1 2 265 133 163
Total DNA 14 86 48197 560 1304
    7.86%   
RC/Helitron Helitron1-Cv 3 1431 477 1269
RC/Helitron Helitron2-Cv 41 19310 471 767
RC/Helitron Helitron3-Cv 40 9901 248 821
RC/Helitron Helitron4-Cv 1 85 85 85
Total RC 4 85 30727 361 1269
    5.01%   
Unclassified Unknown unknown1 4 2637 659 1010
Unknown unknown2 5 542 108 127
Unknown unknown3 4 1459 365 521
Unknown unknown4 1 535 535 535
Unknown unknown5 20 4144 207 269
Unknown unknown6 12 3283 273 482
Unknown unknown7 4 3088 772 1009
Unknown unknown8 6 2051 342 600
Unknown unknown9 1 160 160 160
Unknown unknown10 5 598 120 130
Unknown unknown12 2 228 114 228
Unknown unknown13 7 3069 438 570
Unknown unknown14 2 246 123 129
Unknown unknown15 2 212 106 127
Unknown unknown16 1 151 151 151
Unknown unknown17 2 173 87 115
Unknown unknown18 3 658 219 247
Unknown unknown19 1 60 60 60
Unknown unknown20 10 1057 106 138
Unknown unknown21 1 55 55 55
Unknown unknown22 1 146 146 146
Unknown unknown23 8 3012 377 902
Unknown unknown24 1 138 138 138
Unknown unknown25 1 182 182 182
Unknown unknown26 1 242 242 242
Unknown unknown27 1 82 82 82
Unknown unknown28 1 137 137 137
Unknown unknown29 1 105 105 105
Unknown unknown30 1 108 108 108
Unknown unknown31 1 103 103 103
Unknown unknown32 1 110 110 110
Unknown unknown33 1 1429 1429 1429
Unknown unknown34 8 1913 239 359
Total unknown 33 120 32113 268 1429
    5.24%   
  Total repeats 75 323 150822   
     24.60%