Skip to main content

Table 1 Speed and sensitivity performance of Bowtie and NucBase

From: NucBase, an easy to use read mapper for small RNAs

 

Bowtie

NucBase

0 mismatch

292 s

109 s

701,699 reads aligned

701,699 reads aligned

28,473,348 alignments

28,473,348 alignments

2 mismatches

1,489 s

2,565 s

701,748 reads aligned

701,748 reads aligned

 

94,372,576 alignments

94,541,096 alignments

  1. Mapping of ovarian piRNAs from Brenecke’s database (2007) onto the Drosophila genome.