Skip to main content

Table 2 Tn554-like elements in plasmids and chromosomes

From: Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes

Genbank

Acc. No.

Plasmids

sTBSSR CLSK No.

TnpB ID

LTBSSR CLSK No.

TnpA ID

TnpC

NC_008270

Rhodococcus sp. RHA1 pRHL2

636892

36

636891

41

none

NC_008697

Nocardioides sp. JS614 pNOCA01

636892

36

636891

41

none

NC_008537

Arthrobacte r sp. FB24 plasmid 1

636892

36

636891

41

none

NC_003903

Streptomyces coelicolor pSCP1 (2 copies)

636892

36

636891

41

none

NC_007491

Rhodococcus erythropolis PR4 pREL1

636892

36

636891

41

none

NP_898763

R. erythropolis pBD2

636892

36

636891

41

none

NC_008271

Rhodococcus sp. RHA1 pRHL3

523288

33

2316403

27

2316404

NC_007491

R. erythropolis PR4 pREL1

2526550

33

none

27

2526549

NP_898763

R. erythropolis pBD2

647580

33

647579

27

647578

NP_898763

R. erythropolis pBD2

826662

33

none

27

647587

NC_005707

Bacillus cereus pBc10987

no cluster

33

2462320

53

925958

NC_009426

Novosphingobium aromaticivorans DSM 12444 pNL1

782394

62

782395

53

782393

NC_009427

N. aromaticivorans DSM 12444 pNL2 (2 copies)

782394

62

782395

53

782393

NC_009339

Mycobacterium gilvum PYR-GCK pMFLV01

no cluster

33

no cluster

27

no cluster

NC_009339

M. gilvum PYR-GCK pMFLV01

647579

33

730723

27

647580

NC_008147

Mycobacterium sp. MCS plasmid 1

776375

33

776376

27

772808

NC_008704

Mycobacterium sp. KMS pMKMS02

776375

33

776376

27

772808

NC_004719

Streptomyces avermitilis MA-4680 SAP1*

no cluster

33

none

_

none

Genbank Acc. No.

Chromosomes

sTBSSR CLSK No.

TnpB ID

LTBSSR CLSK No.

TnpA ID

TnpC

NC_008596

Mycobacterium smegmatis str. MC2 155

776375

_

776376

_

772808

NC_008711

Arthrobacter aurescens TC1

776375

_

776376

_

772808

NC_012803

Micrococcus luteus NCTC 2665 (2 copies)

776375

_

776376

_

772808

NC_008705

Mycobacterium sp. KMS

776375

_

776376

_

772808

NC_008726

Mycobacterium vanbaalenii PYR-1

776375

_

776376

_

772808

NC_013235

Nakamurella multipartita DSM 44233 (7 copies)

647580

_

647579

_

647578

NC_010397

Mycobacterium abscessus ATCC 19977 (2 copies)

647580

_

647579

_

730718

NC_009338

Mycobacterium gilvum PYR-GCK

647580

_

647579

_

647578

NC_009077

Mycobacterium sp. JLS

647580

_

647579

_

730718

NC_008726

M. vanbaalenii PYR-1 (4 copies)

647580

_

647579

_

647578

NC_008726

M. vanbaalenii PYR-1

647580

_

647579

_

 

NC_008726

M. vanbaalenii PYR-1

647580

_

647579

_

none

NC_008595

Mycobacterium avium 104

647580

_

647579

_

none

NC_008268

Rhodococcus jostii RHA1

647580

_

647579

_

none

  1. CLSK No., Protein Cluster Database Number; ID, Famint number; none, there is no equivalent annotated protein at that position. no cluster, the protein is annotated but not part of a cluster. *, plasmid SAP1 has a truncated version of the Famint33 protein (246 aa only) and has no partners associated. -, not in the set of analyzed TBSSR proteins. s, shorter, L, longer.