LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons

Table 1 Results for the Drosophila melanogaster use case

This table lists the putative families as assigned during our semi-automatic evaluation run on the Drosophila melanogaster genome (left column). The center column shows the name of the known family represented by that putative family, obtained from matching of the candidate sequence against a reference sequence set. The rightmost column lists the number of candidates in the respective family. The dmel_26 group (matched to various Stalker sequences) was not counted as recovered due to the multitude of non-unique matches to multiple references. Families with the newfam prefix were obtained by re-running the classification algorithm on subsets of the unclassified candidate set. Finally, families marked as manual were derived non-automatically.

ISSN: 1759-8753