Table 1 Locations of human gene transcription termination sites (TTS) characterized using PET data
From: Cell type-specific termination of transcription by transposable element sequences
TTS Locationa | TE Familyb | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Non-TE | All TE | Alu | ERV | hAT | L1 | L2 | MaLR | MIR | TcMar | |
5′-UTR | 3,677 | 696 | 347 (49%) | 52 (7%) | 34 (4%) | 113 (16%) | 57 (8%) | 17 (2%) | 54 (7%) | 22 (3%) |
Internal | 46,716 | 6,014 | 2,955 (55%) | 162 (3%) | 332 (6%) | 842 (15%) | 371 (6%) | 110 (2%) | 377 (7%) | 158 (2%) |
3′-UTR | 15,491 | 867 | 267 (37%) | 25 (3%) | 69 (9%) | 120 (16%) | 60 (8%) | 29 (4%) | 101 (14%) | 43 (6%) |
Annotated c | 16,031 | 1,310 | 291 (25%) | 109 (9%) | 102 (9%) | 229 (20%) | 123 (10%) | 67 (5%) | 150 (13%) | 59 (5%) |
Downstream d | 2,806 | 804 | 222 (33%) | 70 (10%) | 51 (7%) | 141 (21%) | 49 (7%) | 45 (6%) | 53 (7%) | 33 (4%) |
Sum | 84,721 | 8,511 | 4,082 (47%) | 418 (4%) | 588 (6%) | 1,445 (16%) | 660 (7%) | 268 (3%) | 735 (8%) | 315 (3%) |