TY - CHAP AU - Chandler, M. AU - Mahillon, J. ED - Craig, N. L. ED - Craigie, R. ED - Gellert, M. ED - Lambowitz, A. M. PY - 2002 DA - 2002// TI - Insertion sequences revisited BT - Mobile DNA II PB - ASM Press CY - Washington, DC UR - https://doi.org/10.1128/9781555817954.ch15 DO - 10.1128/9781555817954.ch15 ID - Chandler2002 ER - TY - CHAP AU - Rousseau, P. AU - Normand, C. AU - Loot, C. AU - Turlan, C. AU - Alazard, R. AU - Duval-Valentin, G. AU - Chandler, M. ED - Craig, N. L. ED - Craigie, R. ED - Gellert, M. ED - Lambowitz, A. M. PY - 2002 DA - 2002// TI - Transposition of IS911 BT - Mobile DNA II PB - ASM Press CY - Washington, DC UR - https://doi.org/10.1128/9781555817954.ch16 DO - 10.1128/9781555817954.ch16 ID - Rousseau2002 ER - TY - JOUR AU - Polard, P. AU - Prere, M. F. AU - Chandler, M. AU - Fayet, O. PY - 1991 DA - 1991// TI - Programmed translational frameshifting and initiation at an AUU codon in gene expression of bacterial insertion sequence IS911 JO - J Mol Biol VL - 222 UR - https://doi.org/10.1016/0022-2836(91)90490-W DO - 10.1016/0022-2836(91)90490-W ID - Polard1991 ER - TY - JOUR AU - Vogele, K. AU - Schwartz, E. AU - Welz, C. AU - Schiltz, E. AU - Rak, B. PY - 1991 DA - 1991// TI - High-level ribosomal frameshifting directs the synthesis of IS150 gene products JO - Nucleic Acids Res VL - 19 UR - https://doi.org/10.1093/nar/19.16.4377 DO - 10.1093/nar/19.16.4377 ID - Vogele1991 ER - TY - JOUR AU - Hu, S. T. AU - Lee, L. C. AU - Lei, G. S. PY - 1996 DA - 1996// TI - Detection of an IS2-encoded 46-kilodalton protein capable of binding terminal repeats of IS2 JO - J Bacteriol VL - 178 ID - Hu1996 ER - TY - JOUR AU - Lewis, L. A. AU - Grindley, N. D. PY - 1997 DA - 1997// TI - Two abundant intramolecular transposition products, resulting from reactions initiated at a single end, suggest that IS2 transposes by an unconventional pathway JO - Mol Microbiol VL - 25 UR - https://doi.org/10.1046/j.1365-2958.1997.4871848.x DO - 10.1046/j.1365-2958.1997.4871848.x ID - Lewis1997 ER - TY - JOUR AU - Lewis, L. A. AU - Gadura, N. AU - Greene, M. AU - Saby, R. AU - Grindley, N. D. PY - 2001 DA - 2001// TI - The basis of asymmetry in IS2 transposition JO - Mol Microbiol VL - 42 UR - https://doi.org/10.1046/j.1365-2958.2001.02662.x DO - 10.1046/j.1365-2958.2001.02662.x ID - Lewis2001 ER - TY - JOUR AU - Normand, C. AU - Duval-Valentin, G. AU - Haren, L. AU - Chandler, M. PY - 2001 DA - 2001// TI - The terminal inverted repeats of IS911: requirements for synaptic complex assembly and activity JO - J Mol Biol VL - 308 UR - https://doi.org/10.1006/jmbi.2001.4641 DO - 10.1006/jmbi.2001.4641 ID - Normand2001 ER - TY - JOUR AU - Polard, P. AU - Chandler, M. PY - 1995 DA - 1995// TI - Bacterial TPases and retroviral integrases JO - Mol Microbiol VL - 15 UR - https://doi.org/10.1111/j.1365-2958.1995.tb02217.x DO - 10.1111/j.1365-2958.1995.tb02217.x ID - Polard1995 ER - TY - JOUR AU - Duval-Valentin, G. AU - Marty-Cointin, B. AU - Chandler, M. PY - 2004 DA - 2004// TI - Requirement of IS911 replication before integration defines a new bacterial transposition pathway JO - Embo J VL - 23 UR - https://doi.org/10.1038/sj.emboj.7600395 DO - 10.1038/sj.emboj.7600395 ID - Duval-Valentin2004 ER - TY - JOUR AU - Kiss, J. AU - Olasz, F. PY - 1999 DA - 1999// TI - Formation and transposition of the covalently closed IS30 circle: the relation between tandem dimers and monomeric circles JO - Mol Microbiol VL - 34 UR - https://doi.org/10.1046/j.1365-2958.1999.01567.x DO - 10.1046/j.1365-2958.1999.01567.x ID - Kiss1999 ER - TY - JOUR AU - Loessner, I. AU - Dietrich, K. AU - Dittrich, D. AU - Hacker, J. AU - Ziebuhr, W. PY - 2002 DA - 2002// TI - TPase-dependent formation of circular IS256 derivatives in Staphylococcus epidermidis and Staphylococcus aureus JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.17.4709-4714.2002 DO - 10.1128/JB.184.17.4709-4714.2002 ID - Loessner2002 ER - TY - JOUR AU - Prudhomme, M. AU - Turlan, C. AU - Claverys, J. P. AU - Chandler, M. PY - 2002 DA - 2002// TI - Diversity of Tn4001 transposition products: the flanking IS256 elements can form tandem dimers and IS circles JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.2.433-443.2002 DO - 10.1128/JB.184.2.433-443.2002 ID - Prudhomme2002 ER - TY - JOUR AU - Schmid, S. AU - Berger, B. AU - Haas, D. PY - 1999 DA - 1999// TI - Target joining of duplicated insertion sequence IS21 is assisted by IstB protein in vitro JO - J Bacteriol VL - 181 ID - Schmid1999 ER - TY - JOUR AU - Rousseau, P. AU - Tardin, C. AU - Tolou, N. AU - Salome, L. AU - Chandler, M. PY - 2010 DA - 2010// TI - A model for the molecular organisation of the IS911 transpososome JO - Mob DNA VL - 1 UR - https://doi.org/10.1186/1759-8753-1-16 DO - 10.1186/1759-8753-1-16 ID - Rousseau2010 ER - TY - JOUR AU - Polard, P. AU - Chandler, M. PY - 1995 DA - 1995// TI - An in vivo TPase-catalyzed single-stranded DNA circularization reaction JO - Genes Dev VL - 9 UR - https://doi.org/10.1101/gad.9.22.2846 DO - 10.1101/gad.9.22.2846 ID - Polard1995 ER - TY - JOUR AU - Polard, P. AU - Ton-Hoang, B. AU - Haren, L. AU - Betermier, M. AU - Walczak, R. AU - Chandler, M. PY - 1996 DA - 1996// TI - IS911-mediated transpositional recombination in vitro JO - J Mol Biol VL - 264 UR - https://doi.org/10.1006/jmbi.1996.0624 DO - 10.1006/jmbi.1996.0624 ID - Polard1996 ER - TY - JOUR AU - Szabo, M. AU - Kiss, J. AU - Nagy, Z. AU - Chandler, M. AU - Olasz, F. PY - 2008 DA - 2008// TI - Sub-terminal sequences modulating IS30 transposition in vivo and in vitro JO - J Mol Biol VL - 375 UR - https://doi.org/10.1016/j.jmb.2007.10.043 DO - 10.1016/j.jmb.2007.10.043 ID - Szabo2008 ER - TY - JOUR AU - Lewis, L. A. AU - Cylin, E. AU - Lee, H. K. AU - Saby, R. AU - Wong, W. AU - Grindley, N. D. PY - 2004 DA - 2004// TI - The left end of IS2: a compromise between transpositional activity and an essential promoter function that regulates the transposition pathway JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.3.858-865.2004 DO - 10.1128/JB.186.3.858-865.2004 ID - Lewis2004 ER - TY - JOUR AU - Szeverenyi, I. AU - Bodoky, T. AU - Olasz, F. PY - 1996 DA - 1996// TI - Isolation, characterization and transposition of an (IS2)2 intermediate JO - Mol Gen Genet VL - 251 ID - Szeverenyi1996 ER - TY - JOUR AU - Ton-Hoang, B. AU - Betermier, M. AU - Polard, P. AU - Chandler, M. PY - 1997 DA - 1997// TI - Assembly of a strong promoter following IS911 circularization and the role of circles in transposition JO - Embo J VL - 16 UR - https://doi.org/10.1093/emboj/16.11.3357 DO - 10.1093/emboj/16.11.3357 ID - Ton-Hoang1997 ER - TY - JOUR AU - Sekine, Y. AU - Aihara, K. AU - Ohtsubo, E. PY - 1999 DA - 1999// TI - Linearization and transposition of circular molecules of insertion sequence IS3 JO - J Mol Biol VL - 294 UR - https://doi.org/10.1006/jmbi.1999.3181 DO - 10.1006/jmbi.1999.3181 ID - Sekine1999 ER - TY - JOUR AU - Haas, M. AU - Rak, B. PY - 2002 DA - 2002// TI - Escherichia coli insertion sequence IS150: transposition via circular and linear intermediates JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.21.5833-5841.2002 DO - 10.1128/JB.184.21.5833-5841.2002 ID - Haas2002 ER - TY - JOUR AU - Haren, L. AU - Ton-Hoang, B. AU - Chandler, M. PY - 1999 DA - 1999// TI - Integrating DNA: TPases and retroviral integrases JO - Annu Rev Microbiol VL - 53 UR - https://doi.org/10.1146/annurev.micro.53.1.245 DO - 10.1146/annurev.micro.53.1.245 ID - Haren1999 ER - TY - JOUR AU - Nowotny, M. PY - 2009 DA - 2009// TI - Retroviral integrase superfamily: the structural perspective JO - EMBO Rep VL - 10 UR - https://doi.org/10.1038/embor.2008.256 DO - 10.1038/embor.2008.256 ID - Nowotny2009 ER - TY - JOUR AU - Rice, P. A. AU - Baker, T. A. PY - 2001 DA - 2001// TI - Comparative architecture of TPase and integrase complexes JO - Nat Struct Biol VL - 8 UR - https://doi.org/10.1038/86166 DO - 10.1038/86166 ID - Rice2001 ER - TY - JOUR AU - Rowland, S. J. AU - Dyke, K. G. PY - 1990 DA - 1990// TI - Tn552, a novel transposable element from Staphylococcus aureus JO - Mol Microbiol VL - 4 UR - https://doi.org/10.1111/j.1365-2958.1990.tb00669.x DO - 10.1111/j.1365-2958.1990.tb00669.x ID - Rowland1990 ER - TY - JOUR AU - Nagy, Z. AU - Szabo, M. AU - Chandler, M. AU - Olasz, F. PY - 2004 DA - 2004// TI - Analysis of the N-terminal DNA binding domain of the IS30 TPase JO - Mol Microbiol VL - 54 UR - https://doi.org/10.1111/j.1365-2958.2004.04279.x DO - 10.1111/j.1365-2958.2004.04279.x ID - Nagy2004 ER - TY - JOUR AU - Stalder, R. AU - Caspers, P. AU - Olasz, F. AU - Arber, W. PY - 1990 DA - 1990// TI - The N-terminal domain of the insertion sequence 30 TPase interacts specifically with the terminal inverted repeats of the element JO - J Biol Chem VL - 265 ID - Stalder1990 ER - TY - JOUR AU - Haren, L. AU - Normand, C. AU - Polard, P. AU - Alazard, R. AU - Chandler, M. PY - 2000 DA - 2000// TI - IS911 transposition is regulated by protein-protein interactions via a leucine zipper motif JO - J Mol Biol VL - 296 UR - https://doi.org/10.1006/jmbi.1999.3485 DO - 10.1006/jmbi.1999.3485 ID - Haren2000 ER - TY - JOUR AU - Haren, L. AU - Polard, P. AU - Ton-Hoang, B. AU - Chandler, M. PY - 1998 DA - 1998// TI - Multiple oligomerisation domains in the IS911 TPase: a leucine zipper motif is essential for activity JO - J Mol Biol VL - 283 UR - https://doi.org/10.1006/jmbi.1998.2053 DO - 10.1006/jmbi.1998.2053 ID - Haren1998 ER - TY - JOUR AU - Hu, S. T. AU - Hwang, J. H. AU - Lee, L. C. AU - Lee, C. H. AU - Li, P. L. AU - Hsieh, Y. C. PY - 1994 DA - 1994// TI - Functional analysis of the 14 kDa protein of insertion sequence 2 JO - J Mol Biol VL - 236 UR - https://doi.org/10.1006/jmbi.1994.1161 DO - 10.1006/jmbi.1994.1161 ID - Hu1994 ER - TY - JOUR AU - Lei, G. S. AU - Hu, S. T. PY - 1997 DA - 1997// TI - Functional domains of the InsA protein of IS2 JO - J Bacteriol VL - 179 ID - Lei1997 ER - TY - JOUR AU - Rousseau, P. AU - Gueguen, E. AU - Duval-Valentin, G. AU - Chandler, M. PY - 2004 DA - 2004// TI - The helix-turn-helix motif of bacterial insertion sequence IS911 TPase is required for DNA binding JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh276 DO - 10.1093/nar/gkh276 ID - Rousseau2004 ER - TY - JOUR AU - Barth, S. AU - Huhn, M. AU - Matthey, B. AU - Klimka, A. AU - Galinski, E. A. AU - Engert, A. PY - 2000 DA - 2000// TI - Compatible-solute-supported periplasmic expression of functional recombinant proteins under stress conditions JO - Appl Environ Microbiol VL - 66 UR - https://doi.org/10.1128/AEM.66.4.1572-1579.2000 DO - 10.1128/AEM.66.4.1572-1579.2000 ID - Barth2000 ER - TY - JOUR AU - Davis, G. D. AU - Elisee, C. AU - Newham, D. M. AU - Harrison, R. G. PY - 1999 DA - 1999// TI - New fusion protein systems designed to give soluble expression in Escherichia coli JO - Biotechnol Bioeng VL - 65 UR - https://doi.org/3.0.CO;2-I DO - 3.0.CO;2-I ID - Davis1999 ER - TY - JOUR AU - Galloway, C. A. AU - Sowden, M. P. AU - Smith, H. C. PY - 2003 DA - 2003// TI - Increasing the yield of soluble recombinant protein expressed in E. coli by induction during late log phase JO - Biotechniques VL - 34 ID - Galloway2003 ER - TY - JOUR AU - Jenkins, T. M. AU - Hickman, A. B. AU - Dyda, F. AU - Ghirlando, R. AU - Davies, D. R. AU - Craigie, R. PY - 1995 DA - 1995// TI - Catalytic domain of human immunodeficiency virus type 1 integrase: identification of a soluble mutant by systematic replacement of hydrophobic residues JO - Proc Natl Acad Sci USA VL - 92 UR - https://doi.org/10.1073/pnas.92.13.6057 DO - 10.1073/pnas.92.13.6057 ID - Jenkins1995 ER - TY - JOUR AU - Compaan, D. M. AU - Ellington, W. R. PY - 2003 DA - 2003// TI - Functional consequences of a gene duplication and fusion event in an arginine kinase JO - J Exp Biol VL - 206 UR - https://doi.org/10.1242/jeb.00299 DO - 10.1242/jeb.00299 ID - Compaan2003 ER - TY - JOUR AU - Stempfer, G. AU - Holl-Neugebauer, B. AU - Rudolph, R. PY - 1996 DA - 1996// TI - Improved refolding of an immobilized fusion protein JO - Nat Biotechnol VL - 14 UR - https://doi.org/10.1038/nbt0396-329 DO - 10.1038/nbt0396-329 ID - Stempfer1996 ER - TY - JOUR AU - Armstrong, N. AU - de Lencastre, A. AU - Gouaux, E. PY - 1999 DA - 1999// TI - A new protein folding screen: application to the ligand binding domains of a glutamate and kainate receptor and to lysozyme and carbonic anhydrase JO - Protein Sci VL - 8 UR - https://doi.org/10.1110/ps.8.7.1475 DO - 10.1110/ps.8.7.1475 ID - Armstrong1999 ER - TY - JOUR AU - Chen, G. Q. AU - Gouaux, E. PY - 1997 DA - 1997// TI - Overexpression of a glutamate receptor (GluR2) ligand binding domain in Escherichia coli: application of a novel protein folding screen JO - Proc Natl Acad Sci USA VL - 94 UR - https://doi.org/10.1073/pnas.94.25.13431 DO - 10.1073/pnas.94.25.13431 ID - Chen1997 ER - TY - JOUR AU - Rudolph, R. AU - Lilie, H. PY - 1996 DA - 1996// TI - In vitro folding of inclusion body proteins JO - Faseb J VL - 10 ID - Rudolph1996 ER - TY - JOUR AU - Waldo, G. S. AU - Standish, B. M. AU - Berendzen, J. AU - Terwilliger, T. C. PY - 1999 DA - 1999// TI - Rapid protein-folding assay using green fluorescent protein JO - Nat Biotechnol VL - 17 UR - https://doi.org/10.1038/10904 DO - 10.1038/10904 ID - Waldo1999 ER - TY - JOUR AU - Chalmers, R. AU - Guhathakurta, A. AU - Benjamin, H. AU - Kleckner, N. PY - 1998 DA - 1998// TI - IHF modulation of Tn10 transposition: sensory transduction of supercoiling status via a proposed protein/DNA molecular spring JO - Cell VL - 93 UR - https://doi.org/10.1016/S0092-8674(00)81449-X DO - 10.1016/S0092-8674(00)81449-X ID - Chalmers1998 ER - TY - JOUR AU - Chalmers, R. M. AU - Kleckner, N. PY - 1994 DA - 1994// TI - Tn10/IS10 TPase purification, activation, and in vitro reaction JO - J Biol Chem VL - 269 ID - Chalmers1994 ER - TY - JOUR AU - Craig, N. L. AU - Nash, H. A. PY - 1984 DA - 1984// TI - E. coli integration host factor binds to specific sites in DNA JO - Cell VL - 39 UR - https://doi.org/10.1016/0092-8674(84)90478-1 DO - 10.1016/0092-8674(84)90478-1 ID - Craig1984 ER - TY - JOUR AU - Krebs, M. P. AU - Reznikoff, W. S. PY - 1988 DA - 1988// TI - Use of a Tn5 derivative that creates lacZ translational fusions to obtain a transposition mutant JO - Gene VL - 63 UR - https://doi.org/10.1016/0378-1119(88)90531-8 DO - 10.1016/0378-1119(88)90531-8 ID - Krebs1988 ER - TY - JOUR AU - Gasteiger, E. AU - Gattiker, A. AU - Hoogland, C. AU - Ivanyi, I. AU - Appel, R. D. AU - Bairoch, A. PY - 2003 DA - 2003// TI - ExPASy: The proteomics server for in-depth protein knowledge and analysis JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg563 DO - 10.1093/nar/gkg563 ID - Gasteiger2003 ER - TY - JOUR AU - Larkin, M. A. AU - Blackshields, G. AU - Brown, N. P. AU - Chenna, R. AU - McGettigan, P. A. AU - McWilliam, H. AU - Valentin, F. AU - Wallace, I. M. AU - Wilm, A. AU - Lopez, R. PY - 2007 DA - 2007// TI - Clustal W and Clustal × version 2.0 JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm404 DO - 10.1093/bioinformatics/btm404 ID - Larkin2007 ER - TY - JOUR AU - McGuffin, L. J. AU - Bryson, K. AU - Jones, D. T. PY - 2000 DA - 2000// TI - The PSIPRED protein structure prediction server JO - Bioinformatics VL - 16 UR - https://doi.org/10.1093/bioinformatics/16.4.404 DO - 10.1093/bioinformatics/16.4.404 ID - McGuffin2000 ER - TY - JOUR AU - Prere, M. F. AU - Chandler, M. AU - Fayet, O. PY - 1990 DA - 1990// TI - Transposition in Shigella dysenteriae: isolation and analysis of IS911, a new member of the IS3 group of insertion sequences JO - J Bacteriol VL - 172 ID - Prere1990 ER - TY - JOUR AU - Ouali, M. AU - King, R. D. PY - 2000 DA - 2000// TI - Cascaded multiple classifiers for secondary structure prediction JO - Protein Sci VL - 9 UR - https://doi.org/10.1110/ps.9.6.1162 DO - 10.1110/ps.9.6.1162 ID - Ouali2000 ER - TY - JOUR AU - Combet, C. AU - Blanchet, C. AU - Geourjon, C. AU - Deleage, G. PY - 2000 DA - 2000// TI - NPS@: network protein sequence analysis JO - Trends Biochem Sci VL - 25 UR - https://doi.org/10.1016/S0968-0004(99)01540-6 DO - 10.1016/S0968-0004(99)01540-6 ID - Combet2000 ER - TY - JOUR AU - Rost, B. AU - Sander, C. PY - 1994 DA - 1994// TI - Combining evolutionary information and neural networks to predict protein secondary structure JO - Proteins VL - 19 UR - https://doi.org/10.1002/prot.340190108 DO - 10.1002/prot.340190108 ID - Rost1994 ER - TY - JOUR AU - Dodd, I. B. AU - Egan, J. B. PY - 1990 DA - 1990// TI - Improved detection of helix-turn-helix DNA-binding motifs in protein sequences JO - Nucleic Acids Res VL - 18 UR - https://doi.org/10.1093/nar/18.17.5019 DO - 10.1093/nar/18.17.5019 ID - Dodd1990 ER - TY - JOUR AU - Lupas, A. PY - 1996 DA - 1996// TI - Coiled coils: new structures and new functions JO - Trends Biochem Sci VL - 21 UR - https://doi.org/10.1016/S0968-0004(96)10052-9 DO - 10.1016/S0968-0004(96)10052-9 ID - Lupas1996 ER - TY - JOUR AU - Lupas, A. AU - Van Dyke, M. AU - Stock, J. PY - 1991 DA - 1991// TI - Predicting coiled coils from protein sequences JO - Science VL - 252 UR - https://doi.org/10.1126/science.252.5009.1162 DO - 10.1126/science.252.5009.1162 ID - Lupas1991 ER - TY - JOUR AU - Bornberg-Bauer, E. AU - Rivals, E. AU - Vingron, M. PY - 1998 DA - 1998// TI - Computational approaches to identify leucine zippers JO - Nucleic Acids Res VL - 26 UR - https://doi.org/10.1093/nar/26.11.2740 DO - 10.1093/nar/26.11.2740 ID - Bornberg-Bauer1998 ER - TY - JOUR AU - Fayet, O. AU - Ramond, P. AU - Polard, P. AU - Prere, M. F. AU - Chandler, M. PY - 1990 DA - 1990// TI - Functional similarities between retroviruses and the IS3 family of bacterial insertion sequences? JO - Mol Microbiol VL - 4 UR - https://doi.org/10.1111/j.1365-2958.1990.tb00555.x DO - 10.1111/j.1365-2958.1990.tb00555.x ID - Fayet1990 ER - TY - JOUR AU - Rezsohazy, R. AU - Hallet, B. AU - Delcour, J. AU - Mahillon, J. PY - 1993 DA - 1993// TI - The IS4 family of insertion sequences: evidence for a conserved TPase motif JO - Mol Microbiol VL - 9 UR - https://doi.org/10.1111/j.1365-2958.1993.tb01258.x DO - 10.1111/j.1365-2958.1993.tb01258.x ID - Rezsohazy1993 ER - TY - JOUR AU - Katzman, M. AU - Mack, J. P. AU - Skalka, A. M. AU - Leis, J. PY - 1991 DA - 1991// TI - A covalent complex between retroviral integrase and nicked substrate DNA JO - Proc Natl Acad Sci USA VL - 88 UR - https://doi.org/10.1073/pnas.88.11.4695 DO - 10.1073/pnas.88.11.4695 ID - Katzman1991 ER - TY - JOUR AU - Kulkosky, J. AU - Jones, K. S. AU - Katz, R. A. AU - Mack, J. P. AU - Skalka, A. M. PY - 1992 DA - 1992// TI - Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence TPases JO - Mol Cell Biol VL - 12 UR - https://doi.org/10.1128/MCB.12.5.2331 DO - 10.1128/MCB.12.5.2331 ID - Kulkosky1992 ER - TY - JOUR AU - Rice, P. AU - Mizuuchi, K. PY - 1995 DA - 1995// TI - Structure of the bacteriophage Mu TPase core: a common structural motif for DNA transposition and retroviral integration JO - Cell VL - 82 UR - https://doi.org/10.1016/0092-8674(95)90308-9 DO - 10.1016/0092-8674(95)90308-9 ID - Rice1995 ER - TY - JOUR AU - Ohta, S. AU - Tsuchida, K. AU - Choi, S. AU - Sekine, Y. AU - Shiga, Y. AU - Ohtsubo, E. PY - 2002 DA - 2002// TI - Presence of a characteristic D-D-E motif in IS1 TPase JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.22.6146-6154.2002 DO - 10.1128/JB.184.22.6146-6154.2002 ID - Ohta2002 ER - TY - JOUR AU - Ton-Hoang, B. AU - Turlan, C. AU - Chandler, M. PY - 2004 DA - 2004// TI - Functional domains of the IS1 TPase: analysis in vivo and in vitro JO - Mol Microbiol VL - 53 UR - https://doi.org/10.1111/j.1365-2958.2004.04223.x DO - 10.1111/j.1365-2958.2004.04223.x ID - Ton-Hoang2004 ER - TY - JOUR AU - Davies, D. R. AU - Goryshin, I. Y. AU - Reznikoff, W. S. AU - Rayment, I. PY - 2000 DA - 2000// TI - Three-dimensional structure of the Tn5 synaptic complex transposition intermediate JO - Science VL - 289 UR - https://doi.org/10.1126/science.289.5476.77 DO - 10.1126/science.289.5476.77 ID - Davies2000 ER - TY - JOUR AU - Chen, J. C. AU - Krucinski, J. AU - Miercke, L. J. AU - Finer-Moore, J. S. AU - Tang, A. H. AU - Leavitt, A. D. AU - Stroud, R. M. PY - 2000 DA - 2000// TI - Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding JO - Proc Natl Acad Sci USA VL - 97 UR - https://doi.org/10.1073/pnas.150220297 DO - 10.1073/pnas.150220297 ID - Chen2000 ER - TY - JOUR AU - Dyda, F. AU - Hickman, A. B. AU - Jenkins, T. M. AU - Engelman, A. AU - Craigie, R. AU - Davies, D. R. PY - 1994 DA - 1994// TI - Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases JO - Science VL - 266 UR - https://doi.org/10.1126/science.7801124 DO - 10.1126/science.7801124 ID - Dyda1994 ER - TY - JOUR AU - Goldgur, Y. AU - Dyda, F. AU - Hickman, A. B. AU - Jenkins, T. M. AU - Craigie, R. AU - Davies, D. R. PY - 1998 DA - 1998// TI - Three new structures of the core domain of HIV-1 integrase: an active site that binds magnesium JO - Proc Natl Acad Sci USA VL - 95 UR - https://doi.org/10.1073/pnas.95.16.9150 DO - 10.1073/pnas.95.16.9150 ID - Goldgur1998 ER - TY - JOUR AU - Maignan, S. AU - Guilloteau, J. P. AU - Zhou-Liu, Q. AU - Clement-Mella, C. AU - Mikol, V. PY - 1998 DA - 1998// TI - Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: high level of similarity of the active site with other viral integrases JO - J Mol Biol VL - 282 UR - https://doi.org/10.1006/jmbi.1998.2002 DO - 10.1006/jmbi.1998.2002 ID - Maignan1998 ER - TY - JOUR AU - Bujacz, G. AU - Jaskolski, M. AU - Alexandratos, J. AU - Wlodawer, A. AU - Merkel, G. AU - Katz, R. A. AU - Skalka, A. M. PY - 1995 DA - 1995// TI - High-resolution structure of the catalytic domain of avian sarcoma virus integrase JO - J Mol Biol VL - 253 UR - https://doi.org/10.1006/jmbi.1995.0556 DO - 10.1006/jmbi.1995.0556 ID - Bujacz1995 ER - TY - JOUR AU - Yang, Z. N. AU - Mueser, T. C. AU - Bushman, F. D. AU - Hyde, C. C. PY - 2000 DA - 2000// TI - Crystal structure of an active two-domain derivative of Rous sarcoma virus integrase JO - J Mol Biol VL - 296 UR - https://doi.org/10.1006/jmbi.1999.3463 DO - 10.1006/jmbi.1999.3463 ID - Yang2000 ER - TY - JOUR AU - Katayanagi, K. AU - Miyagawa, M. AU - Matsushima, M. AU - Ishikawa, M. AU - Kanaya, S. AU - Ikehara, M. AU - Matsuzaki, T. AU - Morikawa, K. PY - 1990 DA - 1990// TI - Three-dimensional structure of ribonuclease H from E. coli JO - Nature VL - 347 UR - https://doi.org/10.1038/347306a0 DO - 10.1038/347306a0 ID - Katayanagi1990 ER - TY - JOUR AU - Yang, W. AU - Hendrickson, W. A. AU - Crouch, R. J. AU - Satow, Y. PY - 1990 DA - 1990// TI - Structure of ribonuclease H phased at 2 A resolution by MAD analysis of the selenomethionyl protein JO - Science VL - 249 UR - https://doi.org/10.1126/science.2169648 DO - 10.1126/science.2169648 ID - Yang1990 ER - TY - JOUR AU - Ariyoshi, M. AU - Vassylyev, D. G. AU - Iwasaki, H. AU - Nakamura, H. AU - Shinagawa, H. AU - Morikawa, K. PY - 1994 DA - 1994// TI - Atomic structure of the RuvC resolvase: a holliday junction-specific endonuclease from E. coli JO - Cell VL - 78 UR - https://doi.org/10.1016/0092-8674(94)90280-1 DO - 10.1016/0092-8674(94)90280-1 ID - Ariyoshi1994 ER - TY - JOUR AU - Rice, P. AU - Craigie, R. AU - Davies, D. R. PY - 1996 DA - 1996// TI - Retroviral integrases and their cousins JO - Curr Opin Struct Biol VL - 6 UR - https://doi.org/10.1016/S0959-440X(96)80098-4 DO - 10.1016/S0959-440X(96)80098-4 ID - Rice1996 ER - TY - JOUR AU - Lovell, S. AU - Goryshin, I. Y. AU - Reznikoff, W. R. AU - Rayment, I. PY - 2002 DA - 2002// TI - Two-metal active site binding of a Tn5 TPase synaptic complex JO - Nat Struct Biol VL - 9 UR - https://doi.org/10.1038/nsb778 DO - 10.1038/nsb778 ID - Lovell2002 ER - TY - JOUR AU - Wintjens, R. AU - Rooman, M. PY - 1996 DA - 1996// TI - Structural classification of HTH DNA-binding domains and protein-DNA interaction modes JO - J Mol Biol VL - 262 UR - https://doi.org/10.1006/jmbi.1996.0514 DO - 10.1006/jmbi.1996.0514 ID - Wintjens1996 ER - TY - JOUR AU - Landschulz, W. H. AU - Johnson, P. F. AU - McKnight, S. L. PY - 1988 DA - 1988// TI - The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins JO - Science VL - 240 UR - https://doi.org/10.1126/science.3289117 DO - 10.1126/science.3289117 ID - Landschulz1988 ER - TY - JOUR AU - O'Shea, E. K. AU - Klemm, J. D. AU - Kim, P. S. AU - Alber, T. PY - 1991 DA - 1991// TI - X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil JO - Science VL - 254 UR - https://doi.org/10.1126/science.1948029 DO - 10.1126/science.1948029 ID - O'Shea1991 ER - TY - JOUR AU - Jenkins, T. M. AU - Esposito, D. AU - Engelman, A. AU - Craigie, R. PY - 1997 DA - 1997// TI - Critical contacts between HIV-1 integrase and viral DNA identified by structure-based analysis and photo-crosslinking JO - Embo J VL - 16 UR - https://doi.org/10.1093/emboj/16.22.6849 DO - 10.1093/emboj/16.22.6849 ID - Jenkins1997 ER - TY - JOUR AU - Zimmer, M. PY - 2002 DA - 2002// TI - Green fluorescent protein (GFP): applications, structure, and related photophysical behavior JO - Chem Rev VL - 102 UR - https://doi.org/10.1021/cr010142r DO - 10.1021/cr010142r ID - Zimmer2002 ER - TY - JOUR AU - Gupta, R. D. AU - Tawfik, D. S. PY - 2008 DA - 2008// TI - Directed enzyme evolution via small and effective neutral drift libraries JO - Nat Methods VL - 5 UR - https://doi.org/10.1038/nmeth.1262 DO - 10.1038/nmeth.1262 ID - Gupta2008 ER - TY - JOUR AU - Hanson, D. A. AU - Ziegler, S. F. PY - 2004 DA - 2004// TI - Fusion of green fluorescent protein to the C-terminus of granulysin alters its intracellular localization in comparison to the native molecule JO - J Negat Results Biomed VL - 3 UR - https://doi.org/10.1186/1477-5751-3-2 DO - 10.1186/1477-5751-3-2 ID - Hanson2004 ER - TY - JOUR AU - Liu, A. X. AU - Zhang, S. B. AU - Xu, X. J. AU - Ren, D. T. AU - Liu, G. Q. PY - 2004 DA - 2004// TI - Soluble expression and characterization of a GFP-fused pea actin isoform (PEAc1) JO - Cell Res VL - 14 UR - https://doi.org/10.1038/sj.cr.7290241 DO - 10.1038/sj.cr.7290241 ID - Liu2004 ER - TY - JOUR AU - Davies, D. R. AU - Mahnke Braam, L. AU - Reznikoff, W. S. AU - Rayment, I. PY - 1999 DA - 1999// TI - The three-dimensional structure of a Tn5 TPase-related protein determined to 2.9-A resolution JO - J Biol Chem VL - 274 UR - https://doi.org/10.1074/jbc.274.17.11904 DO - 10.1074/jbc.274.17.11904 ID - Davies1999 ER - TY - JOUR AU - Wiegand, T. W. AU - Reznikoff, W. S. PY - 1994 DA - 1994// TI - Interaction of Tn5 TPase with the transposon termini JO - J Mol Biol VL - 235 UR - https://doi.org/10.1006/jmbi.1994.1008 DO - 10.1006/jmbi.1994.1008 ID - Wiegand1994 ER - TY - JOUR AU - Hennig, S. AU - Ziebuhr, W. PY - 2010 DA - 2010// TI - Characterization of the TPase encoded by IS256, the prototype of a major family of bacterial insertion sequence elements JO - J Bacteriol VL - 192 UR - https://doi.org/10.1128/JB.00226-10 DO - 10.1128/JB.00226-10 ID - Hennig2010 ER - TY - JOUR AU - Derbyshire, K. M. AU - Grindley, N. D. PY - 1992 DA - 1992// TI - Binding of the IS903 TPase to its inverted repeat in vitro JO - Embo J VL - 11 ID - Derbyshire1992 ER - TY - JOUR AU - Vos, J. C. AU - van Luenen, H. G. AU - Plasterk, R. H. PY - 1993 DA - 1993// TI - Characterization of the Caenorhabditis elegans Tc1 TPase in vivo and in vitro JO - Genes Dev VL - 7 UR - https://doi.org/10.1101/gad.7.7a.1244 DO - 10.1101/gad.7.7a.1244 ID - Vos1993 ER - TY - JOUR AU - Mack, A. M. AU - Crawford, N. M. PY - 2001 DA - 2001// TI - The Arabidopsis TAG1 TPase has an N-terminal zinc finger DNA binding domain that recognizes distinct subterminal motifs JO - Plant Cell VL - 13 UR - https://doi.org/10.1105/tpc.13.10.2319 DO - 10.1105/tpc.13.10.2319 ID - Mack2001 ER - TY - CHAP AU - Betts, M. J. AU - Russell, R. B. ED - Barnes, M. I. ED - Gray, I. C. PY - 2003 DA - 2003// TI - Amino acid properties and consequences of substitutions BT - Bioinformatics for Geneticists PB - John Wiley and Sons Ltd. CY - Chichester, UK UR - https://doi.org/10.1002/0470867302.ch14 DO - 10.1002/0470867302.ch14 ID - Betts2003 ER - TY - JOUR AU - Henikoff, S. AU - Henikoff, J. G. PY - 1992 DA - 1992// TI - Amino acid substitution matrices from protein blocks JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.22.10915 DO - 10.1073/pnas.89.22.10915 ID - Henikoff1992 ER - TY - JOUR AU - Pabo, C. O. AU - Sauer, R. T. PY - 1992 DA - 1992// TI - Transcription factors: structural families and principles of DNA recognition JO - Annu Rev Biochem VL - 61 UR - https://doi.org/10.1146/annurev.bi.61.070192.005201 DO - 10.1146/annurev.bi.61.070192.005201 ID - Pabo1992 ER - TY - JOUR AU - Clubb, R. T. AU - Schumacher, S. AU - Mizuuchi, K. AU - Gronenborn, A. M. AU - Clore, G. M. PY - 1997 DA - 1997// TI - Solution structure of the I gamma subdomain of the Mu end DNA-binding domain of phage Mu TPase JO - J Mol Biol VL - 273 UR - https://doi.org/10.1006/jmbi.1997.1312 DO - 10.1006/jmbi.1997.1312 ID - Clubb1997 ER - TY - JOUR AU - Schumacher, S. AU - Clubb, R. T. AU - Cai, M. AU - Mizuuchi, K. AU - Clore, G. M. AU - Gronenborn, A. M. PY - 1997 DA - 1997// TI - Solution structure of the Mu end DNA-binding ibeta subdomain of phage Mu TPase: modular DNA recognition by two tethered domains JO - Embo J VL - 16 UR - https://doi.org/10.1093/emboj/16.24.7532 DO - 10.1093/emboj/16.24.7532 ID - Schumacher1997 ER - TY - JOUR AU - van Pouderoyen, G. AU - Ketting, R. F. AU - Perrakis, A. AU - Plasterk, R. H. AU - Sixma, T. K. PY - 1997 DA - 1997// TI - Crystal structure of the specific DNA-binding domain of Tc3 TPase of C.elegans in complex with transposon DNA JO - Embo J VL - 16 UR - https://doi.org/10.1093/emboj/16.19.6044 DO - 10.1093/emboj/16.19.6044 ID - van Pouderoyen1997 ER - TY - JOUR AU - Izsvak, Z. AU - Khare, D. AU - Behlke, J. AU - Heinemann, U. AU - Plasterk, R. H. AU - Ivics, Z. PY - 2002 DA - 2002// TI - Involvement of a bifunctional, paired-like DNA-binding domain and a transpositional enhancer in Sleeping Beauty transposition JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M204001200 DO - 10.1074/jbc.M204001200 ID - Izsvak2002 ER - TY - JOUR AU - Kissinger, C. R. AU - Liu, B. S. AU - Martin-Blanco, E. AU - Kornberg, T. B. AU - Pabo, C. O. PY - 1990 DA - 1990// TI - Crystal structure of an engrailed homeodomain-DNA complex at 2.8 A resolution: a framework for understanding homeodomain-DNA interactions JO - Cell VL - 63 UR - https://doi.org/10.1016/0092-8674(90)90453-L DO - 10.1016/0092-8674(90)90453-L ID - Kissinger1990 ER - TY - JOUR AU - Xu, W. AU - Rould, M. A. AU - Jun, S. AU - Desplan, C. AU - Pabo, C. O. PY - 1995 DA - 1995// TI - Crystal structure of a paired domain-DNA complex at 2.5 A resolution reveals structural basis for Pax developmental mutations JO - Cell VL - 80 UR - https://doi.org/10.1016/0092-8674(95)90518-9 DO - 10.1016/0092-8674(95)90518-9 ID - Xu1995 ER - TY - JOUR AU - Gonzalez, L. AU - Woolfson, D. N. AU - Alber, T. PY - 1996 DA - 1996// TI - Buried polar residues and structural specificity in the GCN4 leucine zipper JO - Nat Struct Biol VL - 3 UR - https://doi.org/10.1038/nsb1296-1011 DO - 10.1038/nsb1296-1011 ID - Gonzalez1996 ER - TY - JOUR AU - Graddis, T. J. AU - Myszka, D. G. AU - Chaiken, I. M. PY - 1993 DA - 1993// TI - Controlled formation of model homo- and heterodimer coiled coil polypeptides JO - Biochemistry VL - 32 UR - https://doi.org/10.1021/bi00210a015 DO - 10.1021/bi00210a015 ID - Graddis1993 ER - TY - JOUR AU - O'Shea, E. K. AU - Lumb, K. J. AU - Kim, P. S. PY - 1993 DA - 1993// TI - Peptide 'Velcro': design of a heterodimeric coiled coil JO - Curr Biol VL - 3 UR - https://doi.org/10.1016/0960-9822(93)90063-T DO - 10.1016/0960-9822(93)90063-T ID - O'Shea1993 ER - TY - JOUR AU - Baker, T. A. AU - Luo, L. PY - 1994 DA - 1994// TI - Identification of residues in the Mu TPase essential for catalysis JO - Proc Natl Acad Sci USA VL - 91 UR - https://doi.org/10.1073/pnas.91.14.6654 DO - 10.1073/pnas.91.14.6654 ID - Baker1994 ER - TY - JOUR AU - Esposito, D. AU - Craigie, R. PY - 1998 DA - 1998// TI - Sequence specificity of viral end DNA binding by HIV-1 integrase reveals critical regions for protein-DNA interaction JO - Embo J VL - 17 UR - https://doi.org/10.1093/emboj/17.19.5832 DO - 10.1093/emboj/17.19.5832 ID - Esposito1998 ER - TY - JOUR AU - van Gent, D. C. AU - Groeneger, A. A. AU - Plasterk, R. H. PY - 1992 DA - 1992// TI - Mutational analysis of the integrase protein of human immunodeficiency virus type 2 JO - Proc Natl Acad Sci USA VL - 89 UR - https://doi.org/10.1073/pnas.89.20.9598 DO - 10.1073/pnas.89.20.9598 ID - van Gent1992 ER - TY - JOUR AU - Calmels, C. AU - de Soultrait, V. R. AU - Caumont, A. AU - Desjobert, C. AU - Faure, A. AU - Fournier, M. AU - Tarrago-Litvak, L. AU - Parissi, V. PY - 2004 DA - 2004// TI - Biochemical and random mutagenesis analysis of the region carrying the catalytic E152 amino acid of HIV-1 integrase JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh298 DO - 10.1093/nar/gkh298 ID - Calmels2004 ER - TY - JOUR AU - Andrake, M. D. AU - Skalka, A. M. PY - 1996 DA - 1996// TI - Retroviral integrase, putting the pieces together JO - J Biol Chem VL - 271 UR - https://doi.org/10.1074/jbc.271.33.19633 DO - 10.1074/jbc.271.33.19633 ID - Andrake1996 ER - TY - JOUR AU - Valkov, E. AU - Gupta, S. S. AU - Hare, S. AU - Helander, A. AU - Roversi, P. AU - McClure, M. AU - Cherepanov, P. PY - 2009 DA - 2009// TI - Functional and structural characterization of the integrase from the prototype foamy virus JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn938 DO - 10.1093/nar/gkn938 ID - Valkov2009 ER - TY - JOUR AU - Obradovic, Z. AU - Peng, K. AU - Vucetic, S. AU - Radivojac, P. AU - Dunker, A. K. PY - 2005 DA - 2005// TI - Exploiting heterogeneous sequence properties improves prediction of protein disorder JO - Proteins VL - 61 UR - https://doi.org/10.1002/prot.20735 DO - 10.1002/prot.20735 ID - Obradovic2005 ER - TY - JOUR AU - Sickmeier, M. AU - Hamilton, J. A. AU - LeGall, T. AU - Vacic, V. AU - Cortese, M. S. AU - Tantos, A. AU - Szabo, B. AU - Tompa, P. AU - Chen, J. AU - Uversky, V. N. AU - Obradovic, Z. AU - Dunker, A. K. PY - 2007 DA - 2007// TI - DisProt: the Database of Disordered Proteins JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkl893 DO - 10.1093/nar/gkl893 ID - Sickmeier2007 ER -