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Table 9 Proportions of differentially expressed or non-differentially expressed genes associated with INDELs are significantly different

From: Characterization and potential functional significance of human-chimpanzee large INDEL variation

Tissue type DE genes associated with RT INDELs/total DE genes (%) Non-DE genes associated with RT INDELs/total non-DE genes (%) Proportions test (P-value)
Brain 1,916/2,266 + 4,618 (28%) 1,790/2,153 + 5,096 (25%) 2.42E-05
Testis 2,862/3,438 + 7,365 (26%) 1,072/1,256 + 3,386 (23%) 9.63E-06
Heart 1,876/2,233 + 4,610 (27%) 1,636/1,948 + 4,706 (25%) 0.00019
Liver 1,416/1,696 + 3,612 (26%) 2,072/2,466 + 5,910 (25%) 0.012
Kidney 1,843/2,179 + 4,410 (28%) 1,776/2,144 + 5,326 (24%) 1.52E-08
  1. DE = differentially expressed; INDEL = insertion and deletion; non-DE = non-differentially expressed, RT = retrotransposon sequence. Proportions for all RT-associated INDELs across all tissues are shown.