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Table 11 Proportions of differentially expressed genes associated or not associated with INDELs are significantly different

From: Characterization and potential functional significance of human-chimpanzee large INDEL variation

Tissue type DE genes with INDELs/total genes with INDELs (%) DE genes with non-INDELs/total genes with non-INDELs (%) Proportions test (P-value)
Brain 2,266/2,266 + 2,153 (51%) 4,618/4,618 + 5,096 (48%) 4.054E-05
Testis 3,438/3,438 + 1,256 (73%) 7,365/7,365 + 3,386 (69%) 3.93E-09
Heart 2,233/2,233 + 1,948 (53%) 4,610/4,610 + 4,706 (5%) 2.7E-05
Liver 1,696/1,696 + 2,466 (41%) 3,612/3,612 + 5,910 (38%) 0.0019
Kidney 2,179/2,179 + 2,144 (5%) 4,410/4,410 + 5,326 (45%) 2.35E-08
  1. DE = differentially expressed; INDEL = insertion and deletion. Proportions for all INDELs across all tissues examined are shown.