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Table 10 Proportions of differentially expressed or non-differentially expressed genes associated with INDELs are significantly different

From: Characterization and potential functional significance of human-chimpanzee large INDEL variation

Tissue type DE genes with NIS-associated INDELs/total DE genes (%) Non-DE genes with NIS-associated INDELs/total non-DE genes (%) Proportions test (P-value)
Brain 801/2,266 + 4,618 (12%) 762/2,153 + 5,096 (1%) 0.036
Testis 1,193/3,438 + 7,365 (11%) 440/1,256 + 3,386 (0.94%) 0.0041
Heart 777/2,233 + 4,610 (11%) 658/1,948 + 4,706 (0.98%) 0.006
Liver 590/1,696 + 3,612 (11%) 838/2,466 + 5,910 (1%) 0.041
Kidney 732/2,179 + 4,410 (11%) 768/2,144 + 5,326 (1%) 0.11
  1. DE = differentially expressed; INDEL = insertion and deletion; non-DE = non-differentially expressed; NIS = noninterspersed sequence. Proportions are shown for all NIS-associated INDELs across all tissues.