Table 1 Chimpanzee-specific APEs characterized by PCR
Locus ID | Position (hg18) | 5' Alu Element | Spacer (bp) | 3' Alu Element | Chimpanzee deletion Size (bp) | ||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Subfamily | Length (bp) | Strand | Â | Subfamily | Length (bp) | Strand | Â |
1 | chr1:105842254-105848252 | AluY | 300 | Positive | 1,407 | AluJb | 291 | Negative | 4,896 |
2 | chr4:54368003-54376671 | AluSx | 297 | Negative | 1,292 | AluSx | 310 | Positive | 5,829 |
3 | chr2:68246922-68253405 | AluY | 312 | Negative | 1,237 | AluY | 304 | Positive | 3,413 |
4 | chr5:71966234-71974703 | AluSq | 293 | Negative | 1,012 | AluSg | 310 | Positive | 4,307 |
5 | chr13:64130795-64137788 | AluJo | 297 | Positive | 1,312 | AluSx | 292 | Negative | 2,776 |
8 | chr17:65716901-65723822 | AluSg | 303 | Positive | 1,285 | AluY | 300 | Negative | 5,585 |
9 | chr8:53032075-53037664 | AluSx | 309 | Positive | 973 | AluSx | 307 | Negative | 2,340 |
10 | chr1:16314268-16319666 | AluSg | 296 | Positive | 793 | AluSq | 309 | Negative | 1,907 |
14 | chr5:78401563-78406842 | AluSq | 313 | Positive | 665 | AluSx | 301 | Negative | 1,656 |
15 | chr4:68494452-68500177 | AluY | 318 | Negative | 1,121 | AluSx | 286 | Positive | 1,654 |