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Table 1 Ginger1 DNA transposons.

From: Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons

Family Accession no. and coordinates Approximate copy number Length (bp) TIR length (bp) Intron number TPase C-terminal domain
Ginger1-1_HM ABRM01007893.1(3098-6531) >70 3,425 270 1 OTU
Ginger1-2_HM ABRM01012112.1(11743-14806) >100 3,064 126 1 OTU
Ginger1-3_HM ABRM01024346.1(3521-874) >74 2,649 142 1 OTU
Ginger1-4_HM ABRM01000174.1(14295-8442) >69 5,882 70 0 Ulp1
Ginger1-5_HM ABRM01005903.1(8144-1149) >40 7,091 45 4 Ulp1
Ginger1-6_HM ABRM01005903.1(15631-10432) >18 5,214 44 2 Ulp1
Ginger1-7_HM ABRM01000534.1(9961-3846) >16 6,088 57 2 Ulp1
Ginger1-8_HM ABRM01022284.1(8912-3479) >20 5,501 58 2 Ulp1
Ginger1-9_HM ABRM01021331.1(4894-8615) >22 3,758 120 2 Ulp1, PHD
Ginger1-10_HM Join ABRM01011282.1(16673-21197), ABRM01021532.1(14237-12463) ≥5 6,495 106 0 Ulp1
Ginger1-11_HM ABRM01013794.1(17006-12397) >23 4,645 109 1 OTU
Ginger1-12_HM ABRM01051013.1(2282-4618) >5 NA NA 1 Ulp1
Giger1-1_AC AASC02016817.1(36379-31560) ≥5 4,336 140 2 OTU
Ginger1-1_BF ABEP01037661.1(397-5076) ≥1 4,068 77 0 NA
Ginger1-1-AP Join ABLF01057402.1(1975-5709), ABLF01044749.1(3692-2680) ≥1 NA NA 4 OTU
Ginger1-2-AP ABLF01023350.1(6513-3321) ≥1 NA NA 1 OTU
  1. AC = Aplysia californica; AP = Acyrthosiphon pisum; BF = Branchiostoma floridae; bp, base pairs; Ginger = 'Gypsy INteGrasE Related'; HM = Hydra magnipapillata; OTU = ovarian tumor (OTU) cysteine protease domain (pfam02338); PHD = plant homeodomain finger motif (smart00249); TIR = terminal inverted repeat; TPase = transposase; Ulp1 = C-terminal catalytic domain of Ulp1 protease (pfam02902).